Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   BJD94_RS11600 Genome accession   NZ_CP017635
Coordinates   2282454..2284535 (+) Length   693 a.a.
NCBI ID   WP_038964892.1    Uniprot ID   -
Organism   Vibrio vulnificus Env1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2277454..2289535
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BJD94_RS11580 (BJD94_10350) gmk 2278375..2278998 (+) 624 WP_011078918.1 guanylate kinase -
  BJD94_RS11585 (BJD94_10355) rpoZ 2279126..2279398 (+) 273 WP_017420484.1 DNA-directed RNA polymerase subunit omega -
  BJD94_RS11590 (BJD94_10360) spoT 2279433..2281553 (+) 2121 WP_038964522.1 bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase -
  BJD94_RS11595 (BJD94_10365) trmH 2281641..2282327 (+) 687 WP_038969587.1 tRNA (guanosine(18)-2'-O)-methyltransferase TrmH -
  BJD94_RS11600 (BJD94_10370) recG 2282454..2284535 (+) 2082 WP_038964892.1 ATP-dependent DNA helicase RecG Machinery gene
  BJD94_RS11605 (BJD94_10375) - 2284789..2286192 (+) 1404 WP_039450058.1 uracil-xanthine permease family protein -
  BJD94_RS11610 (BJD94_10380) envZ 2286270..2287568 (-) 1299 WP_038969871.1 two-component system sensor histidine kinase EnvZ -
  BJD94_RS11615 (BJD94_10385) ompR 2287661..2288380 (-) 720 WP_011078925.1 two-component system response regulator OmpR -
  BJD94_RS11620 (BJD94_10390) greB 2288582..2289064 (-) 483 WP_011078926.1 transcription elongation factor GreB -

Sequence

Protein


Download         Length: 693 a.a.        Molecular weight: 76812.91 Da        Isoelectric Point: 7.5816

>NTDB_id=169660 BJD94_RS11600 WP_038964892.1 2282454..2284535(+) (recG) [Vibrio vulnificus Env1]
MSAQLLSAVPLTSLSGVGAKVAEKLEKIGLSSVQDLLFHLPLRYEDRTRIYPIAKLHAGLWAAVQGNVMQVDTLFGKRKM
LTVKLSDGNGTITLRFFNFTAAMKNNFAEGKLVHAYGEIKRGNMGLEIVHPDYKFFAPTQKPDVEQSLTPVYPTTDGLRQ
ITLRNLTDQALALLDKAAVQELLPAGLYDQQLTMGQALHIIHRPSPEMNLELFDEGKHPAQIRLIMEELLAQNLSMLAVR
SKGQQDVALPLPPVHQLKQQLLAQLPFSPTNAQARVVQEIEEDLQKAHPMMRLVQGDVGSGKTLVAALAAVRAIEHGYQV
ALMAPTELLAEQHAINFANWFEKMGIPVGWLAGKLKGKAKEAELARIASGEAKMVVGTHALFQEHVVFDHLALVIIDEQH
RFGVHQRLELREKGAKQGAYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKREDIVERIRHACL
NEGKQAYWVCTLIDESEVLEAQAAAETAEELQRKLTDVRIGLVHGRMKPAEKQAVMQAFKNNELHLLVATTVIEVGVDVP
NASLMIIENPERLGLAQLHQLRGRVGRGSVASHCVLLYHAPLSKTAQKRLSVLRESNDGFVIAQRDLEIRGPGELLGTKQ
TGLADFKIADLVRDQRLIPEVQRAARYIHHNYPQNAAAIIERWLGERDIYSKA

Nucleotide


Download         Length: 2082 bp        

>NTDB_id=169660 BJD94_RS11600 WP_038964892.1 2282454..2284535(+) (recG) [Vibrio vulnificus Env1]
ATGTCTGCCCAACTGTTATCTGCTGTCCCCCTCACGTCCCTCAGCGGGGTCGGTGCTAAGGTGGCTGAAAAGCTGGAGAA
AATTGGCCTAAGCAGCGTGCAAGATCTGCTGTTTCACTTGCCACTTCGTTACGAAGACCGTACCCGCATCTACCCGATTG
CCAAATTGCATGCTGGATTGTGGGCCGCTGTGCAGGGTAATGTGATGCAAGTGGATACCTTGTTTGGTAAACGCAAGATG
TTAACGGTAAAACTCAGCGACGGGAATGGCACCATCACGCTGCGTTTTTTCAACTTTACCGCGGCAATGAAAAACAATTT
TGCCGAAGGTAAGTTAGTACACGCTTACGGCGAAATTAAGCGCGGCAATATGGGGCTGGAGATCGTTCACCCAGACTACA
AGTTTTTCGCCCCAACGCAGAAGCCCGACGTGGAACAGAGCTTAACGCCTGTTTATCCTACCACCGATGGCTTAAGGCAA
ATCACGCTGCGTAACCTCACAGACCAAGCCCTCGCCCTGCTCGATAAAGCCGCGGTTCAAGAGTTACTGCCTGCCGGGTT
GTATGACCAACAACTGACCATGGGGCAAGCGCTGCACATTATCCATCGTCCTTCGCCGGAGATGAATCTGGAACTGTTCG
ATGAAGGAAAGCACCCAGCCCAAATCCGCTTAATTATGGAAGAGTTGTTGGCTCAGAACTTATCCATGCTCGCCGTGCGC
AGCAAAGGTCAGCAAGATGTCGCGTTGCCACTGCCCCCCGTCCACCAGCTTAAACAACAGCTGTTAGCTCAACTGCCTTT
TTCACCGACCAATGCCCAAGCGCGGGTGGTGCAAGAGATTGAAGAAGATTTGCAAAAAGCGCATCCGATGATGCGTTTGG
TGCAAGGGGATGTCGGTTCGGGCAAAACCTTAGTGGCGGCATTGGCGGCGGTACGCGCTATCGAACATGGCTACCAAGTG
GCGCTGATGGCGCCCACCGAACTGCTGGCCGAGCAGCACGCGATCAACTTTGCTAATTGGTTTGAAAAAATGGGCATCCC
CGTTGGCTGGCTAGCAGGCAAGCTCAAAGGCAAGGCCAAAGAAGCGGAGTTAGCCCGCATTGCCAGTGGCGAAGCGAAAA
TGGTGGTTGGGACGCATGCGCTGTTCCAAGAACACGTGGTGTTTGACCATCTTGCGCTTGTGATCATTGATGAACAACAT
CGCTTTGGCGTACATCAACGCTTGGAGCTGCGTGAAAAAGGCGCCAAACAAGGTGCTTACCCACACCAACTGATAATGAC
TGCCACTCCGATCCCTCGCACATTGGCCATGACCGCCTATGCCGATTTGGAAACGTCGGTGATCGACGAGTTACCGCCGG
GGCGAACCCCGATCCAAACCGTCGCGATTCCCGATACCAAACGCGAGGACATTGTCGAGCGCATTCGTCATGCCTGCCTC
AATGAGGGCAAGCAGGCGTATTGGGTCTGTACCTTGATTGATGAATCGGAAGTATTGGAAGCCCAAGCGGCAGCAGAAAC
CGCCGAAGAGCTGCAACGTAAATTGACTGATGTGCGCATTGGTTTGGTGCATGGCCGAATGAAACCGGCTGAAAAACAAG
CGGTAATGCAAGCGTTCAAAAACAATGAATTACATCTTTTGGTCGCCACCACAGTGATCGAAGTCGGTGTCGATGTGCCC
AACGCCAGCTTGATGATCATCGAAAACCCTGAGCGCTTGGGTCTCGCACAATTGCATCAGTTGCGCGGTCGCGTCGGTCG
AGGCTCAGTTGCAAGCCACTGCGTATTGCTCTATCACGCTCCGCTGTCCAAAACAGCGCAAAAGCGCCTCTCGGTGCTGC
GCGAAAGTAACGATGGTTTCGTCATTGCCCAGCGCGATCTTGAAATCCGCGGGCCGGGCGAACTACTTGGCACCAAACAG
ACTGGCTTGGCGGATTTCAAAATTGCCGATCTCGTCCGCGATCAGCGCCTGATCCCCGAAGTTCAGCGCGCCGCACGCTA
CATTCACCACAATTACCCACAAAATGCCGCCGCGATTATTGAACGCTGGTTGGGCGAACGTGATATTTATTCTAAGGCGT
GA

Domains

Predicted by InterProScan.

RecG wedge domain (RecG_wedge)

(15-172)

DEAD/DEAH box helicase (DEAD)

(271-433)

Helicase conserved C-terminal domain (Helicase_C)

(480-588)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(617-675)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

49.107

96.97

0.476
  recG/mmsA Streptococcus pneumoniae R6

40.089

96.825

0.388
  recG/mmsA Streptococcus pneumoniae R36A

40.089

96.825

0.388
  recG Bacillus subtilis subsp. subtilis str. 168

38.565

96.537

0.372