Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   BJD94_RS09575 Genome accession   NZ_CP017635
Coordinates   1861195..1861920 (+) Length   241 a.a.
NCBI ID   WP_011078574.1    Uniprot ID   A0A3Q0L243
Organism   Vibrio vulnificus Env1     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1856195..1866920
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BJD94_RS09560 (BJD94_08425) clpC 1856670..1859243 (-) 2574 WP_017419679.1 ATP-dependent chaperone ClpB Regulator
  BJD94_RS09565 (BJD94_08430) pgeF 1859361..1860077 (-) 717 WP_172840595.1 peptidoglycan editing factor PgeF -
  BJD94_RS09570 (BJD94_08435) rluD 1860081..1861058 (-) 978 WP_038964194.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  BJD94_RS09575 (BJD94_08440) comL 1861195..1861920 (+) 726 WP_011078574.1 outer membrane protein assembly factor BamD Machinery gene
  BJD94_RS09580 (BJD94_08445) - 1862044..1863480 (-) 1437 WP_108064555.1 IS1182 family transposase -
  BJD94_RS09585 (BJD94_08450) hpf 1863887..1864210 (+) 324 WP_011078575.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  BJD94_RS09590 (BJD94_08455) pheA 1864454..1865632 (+) 1179 WP_011078576.1 prephenate dehydratase -
  BJD94_RS09595 (BJD94_08460) yjjX 1865657..1866193 (+) 537 WP_038940322.1 inosine/xanthosine triphosphatase -
  BJD94_RS09600 (BJD94_08465) trpR 1866223..1866531 (-) 309 WP_011078578.1 trp operon repressor -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27786.57 Da        Isoelectric Point: 5.6928

>NTDB_id=169653 BJD94_RS09575 WP_011078574.1 1861195..1861920(+) (comL) [Vibrio vulnificus Env1]
MKHHTLAGLLAVSVLFGCSSSEQIVPDVPPAELYAEAQTSLQGGNWLTAIEKLEALDSRYPFGAYSEQVQLDLIYAYYKN
DDLALGLATISRFTRLNPTHEKMDWVLYMRGLTHMAQDRNFMHDLFNIDRSDRDPEPVKQAFDDFKKLLERYPNSPYAED
SQKRMFALKNRLAEYDLATADYYLRREAWIAAINRSQELQKTYPDTIAARKSLKIQLEAYKQLGLQDAIARTEELIRLNP
L

Nucleotide


Download         Length: 726 bp        

>NTDB_id=169653 BJD94_RS09575 WP_011078574.1 1861195..1861920(+) (comL) [Vibrio vulnificus Env1]
ATGAAACACCATACTTTAGCAGGCCTGCTCGCGGTATCAGTGTTGTTTGGCTGTTCAAGCAGTGAACAAATTGTGCCGGA
TGTGCCACCAGCAGAGCTGTATGCAGAAGCACAAACCTCTCTTCAAGGAGGAAACTGGCTCACCGCGATTGAGAAACTAG
AAGCGCTAGATTCCCGCTACCCTTTTGGTGCTTACTCAGAACAAGTACAACTTGATTTGATTTACGCCTATTACAAGAAC
GATGATTTGGCTTTGGGTTTAGCGACTATCTCTCGTTTTACGCGTTTAAATCCAACACATGAGAAAATGGATTGGGTGTT
GTACATGCGTGGTCTCACCCACATGGCACAAGATCGTAACTTCATGCATGACTTGTTTAACATTGATCGTAGCGATCGCG
ATCCTGAACCAGTAAAGCAAGCTTTTGATGATTTCAAAAAACTGCTTGAGCGCTACCCAAACAGCCCATATGCGGAAGAT
TCGCAAAAGCGCATGTTTGCTCTAAAAAACCGTTTAGCAGAATATGACCTAGCAACCGCTGATTATTATTTGCGTCGCGA
AGCTTGGATTGCAGCCATCAACCGTTCTCAGGAGTTGCAGAAAACCTATCCAGATACCATCGCTGCGAGAAAATCACTCA
AAATCCAGCTTGAGGCGTATAAACAATTAGGTTTACAAGATGCCATCGCACGCACCGAAGAGTTGATACGTCTGAATCCG
CTCTAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(26-233)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3Q0L243

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

39.583

99.585

0.394
  comL Neisseria gonorrhoeae MS11

39.167

99.585

0.39