Detailed information NTG0169652

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: BJD94_RS09560
• Genome accession: NZ_CP017635
• Coordinates: 1856670..1859243 (-)
• Length: 857 a.a.
• NCBI ID: WP_017419679.1
• Uniprot ID: -
• Organism: Vibrio vulnificus Env1
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 1851670..1864243

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BJD94_RS09560 (BJD94_08425)	clpC	1856670..1859243 (-)	2574	WP_017419679.1	ATP-dependent chaperone ClpB	Regulator
BJD94_RS09565 (BJD94_08430)	pgeF	1859361..1860077 (-)	717	WP_172840595.1	peptidoglycan editing factor PgeF	-
BJD94_RS09570 (BJD94_08435)	rluD	1860081..1861058 (-)	978	WP_038964194.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
BJD94_RS09575 (BJD94_08440)	comL	1861195..1861920 (+)	726	WP_011078574.1	outer membrane protein assembly factor BamD	Machinery gene
BJD94_RS09580 (BJD94_08445)	-	1862044..1863480 (-)	1437	WP_108064555.1	IS1182 family transposase	-
BJD94_RS09585 (BJD94_08450)	hpf	1863887..1864210 (+)	324	WP_011078575.1	ribosome hibernation-promoting factor, HPF/YfiA family	-

Sequence

Protein

• Length: 857 a.a.
• Molecular weight: 96026.94 Da
• Isoelectric Point: 5.2921

>NTDB_id=169652 BJD94_RS09560 WP_017419679.1 1856670..1859243(-) (clpC) [Vibrio vulnificus Env1]
MRLDRFTSKFQIAISDAQSLALGRDHQYIEPVHLMVALLDQNGSPIRPLLTILNVDVTHLRSKLSEMLDRLPKVSGIGGD
VQLSSAMGAMFNLCDKIAQKRQDAYISSEIFLLAAIEDRGPLGQLFKELGLTEQKVSQAIEQIRGGQKVNDQNAEELRQA
LEKFTIDLTERAEQGKLDPVIGRDDEIRRTIQVLQRRTKNNPVIIGEPGVGKTAIVEGLAQRIINNEVPEGLRGRRVLSL
DMGALVAGAKYRGEFEERLKSVLNELSKEEGNIILFIDELHTMVGAGKGEGSMDAGNMLKPALARGELHCVGATTLDEYR
QYIEKDPALERRFQKVLVDEPTVEDTIAILRGLKERYELHHHVEITDPAIVAAASLSHRYVSDRQLPDKAIDLIDEAASS
IRMQIDSKPEALDKLERKIIQLKIEQQALSNEHDEASEKRLRSLNEELNEKEREFAELEEIWNAEKAALSGTQHIKAALE
QARMDMEFARRAGDLSRMSELQYGRIPELEKQLDLATQAEMQEMTLLKNKVTDNEIAEVLSKQTGIPVSKMLEAEKEKLL
RMEEVLHKRVIGQKEAVEVVANAIRRSRAGLSDPNKPIGSFLFLGPTGVGKTELCKTLATFMFDSEDAMVRIDMSEFMEK
HSVARLVGAPPGYVGYEEGGYLTEAVRRKPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNL
GSSRIQENFAMLDYQGIKEQVMEVVTKHFRPEFLNRVDETVVFHPLGQDHIKSIAAIQLNRLATRMEEHGYQLEVSDKAL
DLIAQVGFDPVYGARPLKRAIQQSIENPLAKSILAGSVLPDKKIQLIVNNDQIVAHQ

Nucleotide

• Length: 2574 bp

>NTDB_id=169652 BJD94_RS09560 WP_017419679.1 1856670..1859243(-) (clpC) [Vibrio vulnificus Env1]
ATGCGTCTTGATCGATTTACCAGCAAATTTCAAATCGCTATCTCTGATGCACAATCATTGGCGTTAGGGCGCGATCATCA
ATACATTGAACCTGTTCACTTAATGGTGGCGCTGCTTGATCAAAATGGCAGTCCTATTCGTCCACTGTTGACCATCTTAA
ATGTGGATGTCACCCACCTACGTTCAAAACTCAGCGAAATGCTGGATCGCTTACCCAAAGTGAGCGGTATTGGCGGTGAT
GTACAGCTCTCCTCGGCCATGGGCGCGATGTTTAACCTGTGCGATAAGATTGCGCAAAAACGCCAAGATGCTTACATCTC
ATCTGAAATCTTTTTGCTCGCAGCAATCGAAGATAGAGGGCCACTTGGTCAACTCTTCAAAGAACTTGGCTTAACCGAAC
AAAAAGTGAGTCAAGCTATCGAGCAAATTCGCGGTGGTCAAAAAGTGAATGATCAAAATGCGGAAGAACTTCGCCAAGCG
TTAGAGAAATTTACCATTGATCTGACGGAACGCGCAGAGCAGGGCAAACTTGACCCTGTGATTGGTCGTGACGATGAAAT
TCGTCGCACCATCCAAGTATTGCAACGTCGTACCAAAAACAACCCCGTGATCATTGGTGAACCCGGTGTCGGTAAAACCG
CCATCGTTGAAGGCTTAGCGCAACGCATCATCAATAACGAGGTGCCTGAAGGTCTGCGTGGTCGCCGAGTATTGTCACTC
GATATGGGCGCTTTGGTGGCTGGAGCGAAGTACCGTGGTGAGTTTGAAGAGCGACTTAAATCCGTATTGAATGAGCTCTC
TAAAGAAGAAGGCAATATCATCCTCTTTATTGATGAGCTTCATACCATGGTTGGCGCAGGTAAAGGTGAAGGTTCGATGG
ATGCCGGCAATATGCTCAAGCCCGCACTAGCGCGTGGTGAGTTACATTGTGTGGGCGCCACGACACTCGATGAGTATCGT
CAGTATATCGAGAAAGATCCGGCTCTTGAGCGCCGCTTCCAAAAAGTGCTGGTGGATGAGCCAACAGTGGAAGACACCAT
TGCGATTTTGCGTGGTTTAAAAGAACGCTATGAGCTGCACCATCACGTTGAAATCACCGATCCAGCGATCGTTGCTGCGG
CCAGTTTGTCGCATCGCTATGTTTCTGATCGTCAATTACCGGATAAAGCGATCGATCTTATCGACGAAGCAGCATCCAGT
ATTCGTATGCAGATCGATTCTAAACCCGAAGCTTTGGATAAGTTGGAGCGCAAAATCATCCAACTTAAGATAGAGCAACA
GGCGCTGAGTAATGAACACGATGAAGCGAGTGAGAAGCGTCTGCGCTCACTCAACGAAGAGTTGAATGAGAAAGAGCGTG
AGTTTGCTGAGTTAGAGGAAATTTGGAACGCGGAAAAAGCTGCTTTATCTGGCACTCAGCATATTAAAGCAGCGTTAGAG
CAAGCGCGTATGGATATGGAGTTTGCAAGACGAGCGGGGGATCTTAGCCGCATGTCTGAGCTTCAATATGGTCGTATTCC
AGAGCTTGAGAAGCAACTTGACCTAGCAACGCAAGCGGAAATGCAGGAAATGACCTTGTTGAAAAACAAAGTCACCGATA
ATGAAATTGCGGAAGTGCTTTCAAAGCAAACGGGTATCCCTGTCTCCAAAATGCTTGAAGCAGAAAAAGAAAAGCTGCTT
CGCATGGAAGAGGTGTTGCATAAACGCGTCATTGGGCAGAAAGAGGCGGTGGAAGTTGTTGCGAATGCGATACGCCGAAG
CCGAGCAGGCTTGTCTGATCCCAATAAACCGATTGGTTCCTTCTTATTCTTAGGTCCAACCGGCGTGGGGAAAACGGAAC
TGTGCAAGACATTGGCGACCTTCATGTTCGACAGTGAGGATGCCATGGTGCGTATCGACATGTCCGAGTTTATGGAGAAA
CACTCAGTGGCGCGCTTAGTCGGTGCTCCTCCAGGCTATGTGGGTTATGAAGAAGGTGGCTACTTAACGGAAGCCGTTCG
ACGTAAGCCTTATTCAGTAATTTTGCTCGACGAAGTGGAAAAGGCGCATCCTGATGTGTTCAACATCCTGCTGCAAGTCT
TGGATGATGGTCGATTGACGGATGGACAAGGTAGAACAGTGGATTTCCGCAATACCGTGGTTATCATGACATCAAACCTA
GGCTCCAGCCGCATCCAAGAAAACTTCGCTATGTTGGATTACCAAGGCATCAAAGAACAGGTAATGGAAGTGGTAACCAA
GCACTTTAGGCCGGAGTTTTTGAACCGTGTTGATGAGACTGTTGTCTTCCACCCACTAGGCCAAGACCACATTAAGTCGA
TCGCTGCGATTCAACTTAACCGCTTGGCGACTCGCATGGAAGAGCATGGCTATCAATTGGAAGTGTCCGATAAAGCGCTC
GACTTGATCGCGCAAGTTGGTTTTGACCCGGTTTACGGAGCAAGACCATTGAAACGAGCGATTCAGCAAAGTATCGAAAA
CCCGCTGGCGAAATCTATTTTGGCGGGCTCGGTGCTACCGGATAAGAAAATACAGCTTATCGTCAACAACGACCAAATTG
TGGCACACCAATAA

Domains

Predicted by InterProScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (766-845)

• ATPase family associated with various cellular activities (AAA) (AAA) (204-335)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (17-68)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (94-145)

• AAA domain (Cdc48 subfamily) (AAA_2) (596-759)

• AAA lid domain (AAA_lid_9) (342-444)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	46.828	100	0.474
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	41.52	99.767	0.414
clpE	Streptococcus mutans UA159	48.012	79.23	0.38
clpE	Streptococcus pneumoniae D39	48.006	78.996	0.379
clpE	Streptococcus pneumoniae Rx1	48.006	78.996	0.379
clpE	Streptococcus pneumoniae R6	48.006	78.996	0.379
clpC	Lactococcus lactis subsp. cremoris KW2	45.864	80.397	0.369