Detailed information NTG0169575

Bioinformatically predicted

Overview

• Name: scnR
• Type: Regulator
• Locus tag: CPRO_RS08330
• Genome accession: NZ_CP014223
• Coordinates: 1790075..1790785 (+)
• Length: 236 a.a.
• NCBI ID: WP_066050277.1
• Uniprot ID: A0A0X1U8N6
• Organism: Anaerotignum propionicum DSM 1682 strain X2
• Function: regulate comX expression (predicted from homology) Competence regulation

Genomic Context

Location: 1785075..1795785

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CPRO_RS08305 (CPRO_17090)	-	1785369..1786502 (-)	1134	WP_066050269.1	hypothetical protein	-
CPRO_RS15765	-	1787496..1787846 (-)	351	WP_236782330.1	ABC transporter permease	-
CPRO_RS15770	-	1787851..1788228 (-)	378	WP_236782331.1	ABC transporter permease	-
CPRO_RS08320 (CPRO_17130)	-	1788241..1788996 (-)	756	WP_066050271.1	ABC transporter permease	-
CPRO_RS08325 (CPRO_17140)	-	1788996..1789907 (-)	912	WP_066050274.1	ABC transporter ATP-binding protein	-
CPRO_RS08330 (CPRO_17150)	scnR	1790075..1790785 (+)	711	WP_066050277.1	response regulator transcription factor	Regulator
CPRO_RS08335 (CPRO_17160)	-	1790788..1792176 (+)	1389	WP_066050280.1	HAMP domain-containing sensor histidine kinase	-

Sequence

Protein

• Length: 236 a.a.
• Molecular weight: 26902.21 Da
• Isoelectric Point: 5.2226

>NTDB_id=169575 CPRO_RS08330 WP_066050277.1 1790075..1790785(+) (scnR) [Anaerotignum propionicum DSM 1682 strain X2]
MNDLKNKKLLIVDDEREIRNMMDNFLRKEGFIRIYQASDCMEALETCRSVKPDIAILDVMLPDGDGFSLLSSLRQISNMP
VLFLSARGEDEDRLLGLGLGADDYIVKPFLPRELILRLTAILRRVYAPPKQEQRPAFQLGERTINLEGGIVRDGITENPL
TAKELVLLLKLYENRNRIVTSDALCQAAWGDDYYGYENTLMVHIRRIREKIEANPSNPEYLLTIRGLGYKLMVGGV

Nucleotide

• Length: 711 bp

>NTDB_id=169575 CPRO_RS08330 WP_066050277.1 1790075..1790785(+) (scnR) [Anaerotignum propionicum DSM 1682 strain X2]
ATGAATGATTTAAAGAACAAAAAACTGCTCATCGTAGATGATGAGCGTGAAATAAGAAATATGATGGATAATTTCTTACG
TAAAGAAGGCTTTATACGTATTTATCAAGCTTCCGATTGTATGGAGGCTTTAGAAACTTGTCGGTCTGTAAAACCTGACA
TTGCCATTTTAGATGTTATGCTACCAGATGGAGACGGTTTCTCCCTTCTGTCCTCATTGCGACAAATATCAAATATGCCC
GTCCTTTTTTTATCCGCAAGAGGAGAAGACGAGGACCGTCTATTGGGGCTTGGCCTTGGTGCAGATGACTATATTGTAAA
ACCATTTTTGCCACGAGAACTCATTCTGCGTTTAACGGCAATTCTGAGAAGGGTTTATGCACCGCCAAAGCAGGAGCAAC
GGCCTGCCTTCCAATTAGGAGAGCGTACTATTAATCTAGAGGGTGGTATTGTCCGAGATGGCATCACTGAAAATCCTTTG
ACAGCAAAAGAACTTGTATTGCTGTTAAAGCTTTATGAAAATAGAAATCGTATCGTAACCAGTGATGCCCTTTGCCAAGC
TGCCTGGGGAGATGATTATTATGGCTACGAAAATACACTAATGGTTCATATCAGGCGCATCCGTGAAAAGATTGAGGCTA
ACCCATCCAATCCAGAATATTTGCTTACCATTAGAGGGTTAGGTTACAAGTTGATGGTTGGGGGGGTGTAA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (10-118)

• Transcriptional regulatory protein, C terminal (Trans_reg_C) (159-231)

3D structure

• AlphaFold DB: A0A0X1U8N6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
scnR	Streptococcus mutans UA159	49.569	98.305	0.487
micA	Streptococcus pneumoniae Cp1015	41.228	96.61	0.398
vicR	Streptococcus mutans UA159	40.611	97.034	0.394