Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   VN23_RS20865 Genome accession   NZ_CP014222
Coordinates   4652350..4653153 (+) Length   267 a.a.
NCBI ID   WP_046350357.1    Uniprot ID   -
Organism   Janthinobacterium sp. B9-8     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4647350..4658153
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VN23_RS20850 (VN23_20850) - 4649588..4650514 (-) 927 WP_046350360.1 ZIP family metal transporter -
  VN23_RS20855 (VN23_20855) pgeF 4650563..4651315 (-) 753 WP_046350359.1 peptidoglycan editing factor PgeF -
  VN23_RS20860 (VN23_20860) rluD 4651302..4652351 (-) 1050 WP_046350358.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  VN23_RS20865 (VN23_20865) comL 4652350..4653153 (+) 804 WP_046350357.1 outer membrane protein assembly factor BamD Machinery gene
  VN23_RS20890 (VN23_20890) tmk 4653719..4654345 (+) 627 WP_046350356.1 dTMP kinase -
  VN23_RS20895 (VN23_20895) holB 4654471..4655490 (+) 1020 WP_046350355.1 DNA polymerase III subunit delta' -
  VN23_RS20900 (VN23_20900) - 4655487..4655852 (+) 366 WP_046350354.1 PilZ domain-containing protein -
  VN23_RS20905 (VN23_20905) - 4656097..4656867 (+) 771 WP_046350353.1 TatD family hydrolase -
  VN23_RS22335 - 4656864..4656986 (+) 123 WP_257722036.1 hypothetical protein -
  VN23_RS20910 (VN23_20910) - 4656983..4657759 (+) 777 WP_046350352.1 MBL fold metallo-hydrolase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 30510.57 Da        Isoelectric Point: 7.4078

>NTDB_id=169565 VN23_RS20865 WP_046350357.1 4652350..4653153(+) (comL) [Janthinobacterium sp. B9-8]
MNKILPRFIVSAVLAGLLAACASTPDEQDETRGWTAEKIFTEAKAEQDSRNFDRSNKLFEKLEARFPYGRHAQQAQIETA
YNHYKNQEPLLAFAAIDRFIKQYPAHPNIDYAYYLKGLVNFNEAQGFLSSLIKQDMSERDPKAARESFDTFRQLVTRYPE
SKYAADSTVRMGYLVGALASHELHVAKYYYNRGAFLAAANRGKYLLETYSSTKQVEPALGIMALAYDKLGLVELRDDVKK
VLFKNYPQTAVLDEGVLFSDADWWKPW

Nucleotide


Download         Length: 804 bp        

>NTDB_id=169565 VN23_RS20865 WP_046350357.1 4652350..4653153(+) (comL) [Janthinobacterium sp. B9-8]
ATGAATAAGATTCTACCGCGATTCATCGTCTCTGCAGTACTTGCCGGATTATTGGCAGCTTGCGCATCCACTCCTGATGA
ACAGGATGAAACCCGTGGCTGGACGGCCGAGAAGATTTTTACCGAGGCAAAAGCCGAGCAAGACAGCCGCAATTTTGATC
GTTCAAACAAGCTGTTTGAAAAGTTAGAAGCACGTTTTCCTTATGGCAGACATGCTCAGCAAGCGCAAATCGAAACGGCT
TATAACCATTATAAAAACCAAGAGCCTTTGTTGGCTTTTGCGGCAATCGATCGCTTTATTAAGCAATACCCAGCGCATCC
AAATATTGATTACGCCTACTATTTAAAGGGTTTGGTTAACTTTAACGAGGCGCAGGGCTTCTTATCCAGCCTGATCAAGC
AGGATATGTCGGAGCGCGATCCAAAGGCAGCAAGGGAGTCATTTGATACCTTCCGCCAGCTTGTTACCCGCTATCCAGAG
AGTAAGTACGCCGCTGATTCAACGGTACGTATGGGGTATTTGGTTGGTGCATTGGCTAGCCACGAGTTGCACGTAGCTAA
GTACTATTACAACCGTGGTGCATTTTTAGCCGCAGCAAATCGTGGTAAATATTTACTAGAAACGTATTCGAGTACCAAGC
AGGTGGAGCCCGCTTTAGGCATCATGGCCTTGGCTTACGATAAGCTTGGTTTAGTTGAGTTGCGTGACGATGTGAAAAAA
GTGTTGTTTAAGAATTACCCGCAAACAGCAGTATTGGATGAGGGCGTTTTGTTCTCTGACGCTGACTGGTGGAAGCCTTG
GTAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(35-240)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

49.259

100

0.498
  comL Neisseria gonorrhoeae MS11

46.992

99.625

0.468

Multiple sequence alignment