Detailed information
Bioinformatically predicted
Overview
| Name | pilR | Type | Regulator |
| Locus tag | VN23_RS19575 | Genome accession | NZ_CP014222 |
| Coordinates | 4347305..4348654 (+) | Length | 449 a.a. |
| NCBI ID | WP_046351963.1 | Uniprot ID | A0A0X8GSE6 |
| Organism | Janthinobacterium sp. B9-8 | ||
| Function | regulate pilin expression (predicted from homology) Competence regulation |
||
Genomic Context
Location: 4342305..4353654
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| VN23_RS19550 (VN23_19550) | - | 4342433..4342981 (+) | 549 | WP_046351958.1 | hypothetical protein | - |
| VN23_RS19555 (VN23_19555) | ttcA | 4343185..4344126 (+) | 942 | WP_046351959.1 | tRNA 2-thiocytidine(32) synthetase TtcA | - |
| VN23_RS19560 (VN23_19560) | - | 4344123..4344908 (+) | 786 | WP_082752859.1 | fused MFS/spermidine synthase | - |
| VN23_RS19565 (VN23_19565) | - | 4345007..4345522 (+) | 516 | WP_046351961.1 | RNA pyrophosphohydrolase | - |
| VN23_RS19570 (VN23_19570) | - | 4345741..4347321 (+) | 1581 | WP_046351962.1 | ATP-binding protein | - |
| VN23_RS19575 (VN23_19575) | pilR | 4347305..4348654 (+) | 1350 | WP_046351963.1 | sigma-54 dependent transcriptional regulator | Regulator |
| VN23_RS19580 (VN23_19580) | ampD | 4348713..4349291 (+) | 579 | WP_046351964.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| VN23_RS19585 (VN23_19585) | - | 4349324..4351219 (+) | 1896 | WP_046351965.1 | potassium transporter Kup | - |
| VN23_RS19590 (VN23_19590) | - | 4351325..4351921 (-) | 597 | WP_046351966.1 | 6-carboxytetrahydropterin synthase | - |
Sequence
Protein
Download Length: 449 a.a. Molecular weight: 49296.51 Da Isoelectric Point: 5.6816
>NTDB_id=169563 VN23_RS19575 WP_046351963.1 4347305..4348654(+) (pilR) [Janthinobacterium sp. B9-8]
MAKKFNKNCKRVLVVDDEPDLAELLELTLLKMGLDVDCAYGVKDACTRLDKVSYDLCLTDMRMPDGEGIEIIQHIQSNGL
DVPVAVITAYGSTDNAVAALKAGAFDYLAKPVALDQLRSLVKSALALDDAPMVETNDRSLLGESAAMQHALELIAKLAKS
QAPVYVTGESGSGKERAARLIHASSSRAKQPFVAVNCGAIPENLMESEFFGHKKGAFTGANEDRDGFFHAANSGTLFLDE
VADLPLAMQVKLLRVIQERKVRKLGATAEEALDVRIISATHQSLSQCVEAGRFRQDLYYRLNVIELRMPALREMGGDVLV
IARHVLARVAKLNGQKLPDFSADALTALQRYDFPGNVRELENVLERALALADGHAITAADLQLSIADHEAEEGHDLGDKF
PLQDYLDRVEKQAILEALEKTRFNRTQAAKILGLTFRSLRYRLDRLGIQ
MAKKFNKNCKRVLVVDDEPDLAELLELTLLKMGLDVDCAYGVKDACTRLDKVSYDLCLTDMRMPDGEGIEIIQHIQSNGL
DVPVAVITAYGSTDNAVAALKAGAFDYLAKPVALDQLRSLVKSALALDDAPMVETNDRSLLGESAAMQHALELIAKLAKS
QAPVYVTGESGSGKERAARLIHASSSRAKQPFVAVNCGAIPENLMESEFFGHKKGAFTGANEDRDGFFHAANSGTLFLDE
VADLPLAMQVKLLRVIQERKVRKLGATAEEALDVRIISATHQSLSQCVEAGRFRQDLYYRLNVIELRMPALREMGGDVLV
IARHVLARVAKLNGQKLPDFSADALTALQRYDFPGNVRELENVLERALALADGHAITAADLQLSIADHEAEEGHDLGDKF
PLQDYLDRVEKQAILEALEKTRFNRTQAAKILGLTFRSLRYRLDRLGIQ
Nucleotide
Download Length: 1350 bp
>NTDB_id=169563 VN23_RS19575 WP_046351963.1 4347305..4348654(+) (pilR) [Janthinobacterium sp. B9-8]
ATGGCCAAAAAATTTAATAAAAATTGTAAGCGTGTGCTGGTGGTGGACGATGAGCCAGATCTTGCTGAGCTACTTGAGCT
CACCTTGTTGAAAATGGGCCTAGATGTCGATTGTGCCTACGGGGTGAAAGACGCGTGCACACGGTTGGATAAGGTGTCTT
ATGATCTTTGTCTGACAGATATGCGCATGCCAGATGGTGAAGGCATAGAAATTATTCAGCATATTCAAAGCAACGGCCTT
GATGTGCCCGTGGCCGTGATTACGGCGTATGGCAGTACGGATAATGCAGTGGCGGCACTTAAAGCAGGCGCGTTTGATTA
CTTAGCCAAACCTGTGGCCTTAGATCAGCTGCGCTCCTTGGTTAAATCTGCTTTGGCGCTCGATGATGCGCCTATGGTAG
AGACAAATGATCGTTCTTTGCTGGGCGAATCGGCAGCTATGCAGCATGCCCTGGAGCTGATCGCTAAATTAGCTAAAAGC
CAAGCCCCTGTGTATGTGACTGGTGAATCCGGATCGGGTAAAGAGCGCGCTGCCAGGCTGATTCACGCCAGCTCTAGCCG
AGCCAAACAGCCTTTTGTGGCTGTGAATTGCGGTGCTATTCCAGAAAACTTAATGGAAAGCGAGTTTTTCGGCCACAAAA
AAGGGGCTTTTACCGGCGCAAATGAAGATAGAGATGGGTTTTTTCATGCCGCCAATAGCGGCACCTTGTTTTTAGACGAG
GTGGCCGATTTGCCGCTGGCGATGCAGGTTAAGCTGCTCAGGGTGATTCAGGAGCGAAAGGTGCGCAAATTAGGCGCAAC
CGCAGAGGAAGCCTTGGATGTGCGAATTATCTCTGCCACGCACCAAAGCCTGAGCCAATGCGTGGAAGCGGGGCGCTTTA
GGCAGGATTTATACTACCGTCTTAATGTGATCGAGCTGCGGATGCCTGCTTTAAGAGAAATGGGCGGCGATGTGCTGGTG
ATTGCGCGCCATGTGCTGGCAAGAGTGGCTAAATTAAACGGGCAAAAGCTACCTGATTTTTCTGCGGATGCGCTGACTGC
ACTGCAGCGTTATGATTTTCCCGGCAATGTCCGTGAGCTGGAAAACGTGCTGGAGCGGGCACTGGCTTTGGCTGATGGCC
ATGCAATTACGGCGGCAGATTTGCAGCTCAGCATCGCCGATCATGAGGCAGAGGAAGGCCATGATTTGGGTGATAAATTC
CCTTTGCAAGATTACTTAGATCGGGTCGAAAAACAGGCGATCTTAGAAGCACTGGAAAAAACGCGTTTTAATCGTACCCA
AGCTGCCAAAATACTTGGTCTTACTTTCCGCAGCCTGCGTTACCGCCTAGATCGTTTGGGAATTCAGTAA
ATGGCCAAAAAATTTAATAAAAATTGTAAGCGTGTGCTGGTGGTGGACGATGAGCCAGATCTTGCTGAGCTACTTGAGCT
CACCTTGTTGAAAATGGGCCTAGATGTCGATTGTGCCTACGGGGTGAAAGACGCGTGCACACGGTTGGATAAGGTGTCTT
ATGATCTTTGTCTGACAGATATGCGCATGCCAGATGGTGAAGGCATAGAAATTATTCAGCATATTCAAAGCAACGGCCTT
GATGTGCCCGTGGCCGTGATTACGGCGTATGGCAGTACGGATAATGCAGTGGCGGCACTTAAAGCAGGCGCGTTTGATTA
CTTAGCCAAACCTGTGGCCTTAGATCAGCTGCGCTCCTTGGTTAAATCTGCTTTGGCGCTCGATGATGCGCCTATGGTAG
AGACAAATGATCGTTCTTTGCTGGGCGAATCGGCAGCTATGCAGCATGCCCTGGAGCTGATCGCTAAATTAGCTAAAAGC
CAAGCCCCTGTGTATGTGACTGGTGAATCCGGATCGGGTAAAGAGCGCGCTGCCAGGCTGATTCACGCCAGCTCTAGCCG
AGCCAAACAGCCTTTTGTGGCTGTGAATTGCGGTGCTATTCCAGAAAACTTAATGGAAAGCGAGTTTTTCGGCCACAAAA
AAGGGGCTTTTACCGGCGCAAATGAAGATAGAGATGGGTTTTTTCATGCCGCCAATAGCGGCACCTTGTTTTTAGACGAG
GTGGCCGATTTGCCGCTGGCGATGCAGGTTAAGCTGCTCAGGGTGATTCAGGAGCGAAAGGTGCGCAAATTAGGCGCAAC
CGCAGAGGAAGCCTTGGATGTGCGAATTATCTCTGCCACGCACCAAAGCCTGAGCCAATGCGTGGAAGCGGGGCGCTTTA
GGCAGGATTTATACTACCGTCTTAATGTGATCGAGCTGCGGATGCCTGCTTTAAGAGAAATGGGCGGCGATGTGCTGGTG
ATTGCGCGCCATGTGCTGGCAAGAGTGGCTAAATTAAACGGGCAAAAGCTACCTGATTTTTCTGCGGATGCGCTGACTGC
ACTGCAGCGTTATGATTTTCCCGGCAATGTCCGTGAGCTGGAAAACGTGCTGGAGCGGGCACTGGCTTTGGCTGATGGCC
ATGCAATTACGGCGGCAGATTTGCAGCTCAGCATCGCCGATCATGAGGCAGAGGAAGGCCATGATTTGGGTGATAAATTC
CCTTTGCAAGATTACTTAGATCGGGTCGAAAAACAGGCGATCTTAGAAGCACTGGAAAAAACGCGTTTTAATCGTACCCA
AGCTGCCAAAATACTTGGTCTTACTTTCCGCAGCCTGCGTTACCGCCTAGATCGTTTGGGAATTCAGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilR | Pseudomonas aeruginosa PAK |
57.37 |
98.218 |
0.563 |
| pilR | Acinetobacter baumannii strain A118 |
45.633 |
100 |
0.465 |
| luxO | Vibrio cholerae strain A1552 |
38.427 |
99.109 |
0.381 |