Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   BJK09_RS06215 Genome accession   NZ_CP017601
Coordinates   1360513..1361112 (+) Length   199 a.a.
NCBI ID   WP_027226815.1    Uniprot ID   -
Organism   Legionella pneumophila strain D6026     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1355513..1366112
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BJK09_RS06190 (BJK09_06090) - 1355859..1356599 (+) 741 WP_032830130.1 peptidoglycan DD-metalloendopeptidase family protein -
  BJK09_RS06195 (BJK09_06095) rpoS 1356685..1357710 (+) 1026 WP_027226811.1 RNA polymerase sigma factor RpoS Regulator
  BJK09_RS06200 (BJK09_06100) hmgA 1357853..1359103 (-) 1251 WP_027226812.1 homogentisate 1,2-dioxygenase -
  BJK09_RS06205 (BJK09_06105) - 1359249..1359992 (+) 744 WP_027226813.1 YebC/PmpR family DNA-binding transcriptional regulator -
  BJK09_RS06210 (BJK09_06110) ruvC 1359992..1360516 (+) 525 WP_027226814.1 crossover junction endodeoxyribonuclease RuvC -
  BJK09_RS06215 (BJK09_06115) ruvA 1360513..1361112 (+) 600 WP_027226815.1 Holliday junction branch migration protein RuvA Machinery gene
  BJK09_RS06220 (BJK09_06120) - 1361171..1361491 (+) 321 WP_027226816.1 hypothetical protein -
  BJK09_RS06225 (BJK09_06125) lem8 1361569..1363128 (-) 1560 WP_027226817.1 Dot/Icm T4SS effector Lem8 -
  BJK09_RS06230 (BJK09_06130) - 1363417..1364832 (-) 1416 WP_027226818.1 ATP-binding protein -
  BJK09_RS06235 (BJK09_06135) ciaR 1364829..1365506 (-) 678 WP_011213604.1 response regulator Regulator
  BJK09_RS06240 (BJK09_06140) - 1365567..1366112 (-) 546 WP_027221489.1 septation protein A -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 22074.29 Da        Isoelectric Point: 6.4932

>NTDB_id=169417 BJK09_RS06215 WP_027226815.1 1360513..1361112(+) (ruvA) [Legionella pneumophila strain D6026]
MIGWLHGQIVDRHQPGKLVLDVNGVGYDVETSLNTFFQIENDNQSVGLHIHTIVREDALLLYGFLDKEERSLFRALIKVN
GVGPKLAMAILSSISPKEFIQCIHQENAALLTKLPGIGKKTAERLVIEMRDSIKQFDGSVSDTLQKQAGSAHSQEEAISA
LEALGYKPQEAWKVVNKIDNGNKSCEQLIREALQILSSR

Nucleotide


Download         Length: 600 bp        

>NTDB_id=169417 BJK09_RS06215 WP_027226815.1 1360513..1361112(+) (ruvA) [Legionella pneumophila strain D6026]
ATGATAGGTTGGCTCCATGGTCAAATTGTAGATAGGCATCAGCCAGGAAAATTGGTTCTTGATGTCAATGGAGTGGGGTA
TGATGTAGAAACCTCTTTGAATACTTTTTTTCAGATAGAAAATGATAATCAATCGGTTGGATTACATATTCACACGATAG
TTCGAGAAGATGCCTTGTTATTGTATGGCTTCCTGGATAAAGAGGAGCGTTCTTTATTCAGAGCATTAATTAAAGTGAAT
GGGGTAGGCCCCAAACTGGCTATGGCTATTTTATCCAGTATTTCTCCTAAGGAATTTATTCAGTGCATTCACCAGGAAAA
CGCTGCTTTGTTAACCAAGCTACCTGGTATAGGTAAGAAAACTGCAGAACGATTAGTAATCGAGATGAGAGACAGTATAA
AGCAATTTGATGGTTCGGTTTCTGATACTCTCCAAAAACAGGCAGGTAGTGCTCATAGTCAAGAAGAAGCGATTAGCGCG
TTGGAAGCATTAGGTTATAAGCCACAAGAGGCTTGGAAAGTTGTGAATAAAATTGATAATGGTAATAAGAGTTGTGAGCA
GTTGATTCGTGAGGCTTTGCAAATTCTTTCTTCGCGATGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(73-131)

RuvA N terminal domain (RuvA_N)

(1-63)

RuvA, C-terminal domain (RuvA_C)

(154-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Bacillus subtilis subsp. subtilis str. 168

35.784

100

0.367