Detailed information
Bioinformatically predicted
Overview
| Name | pilR | Type | Regulator |
| Locus tag | AWU82_RS26280 | Genome accession | NZ_CP014205 |
| Coordinates | 5761333..5762679 (+) | Length | 448 a.a. |
| NCBI ID | WP_064382095.1 | Uniprot ID | - |
| Organism | Pseudomonas glycinae strain MS586 | ||
| Function | regulate pilin expression (predicted from homology) Competence regulation |
||
Genomic Context
Location: 5756333..5767679
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AWU82_RS26255 (AWU82_16325) | pgeF | 5756548..5757270 (-) | 723 | WP_064382093.1 | peptidoglycan editing factor PgeF | - |
| AWU82_RS26260 (AWU82_16330) | rluD | 5757267..5758229 (-) | 963 | WP_011335991.1 | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | - |
| AWU82_RS26265 (AWU82_16335) | - | 5758382..5759398 (+) | 1017 | WP_007959566.1 | outer membrane protein assembly factor BamD | - |
| AWU82_RS26270 (AWU82_16340) | - | 5759524..5759757 (+) | 234 | WP_011335992.1 | PP0621 family protein | - |
| AWU82_RS26275 (AWU82_16345) | pilS | 5759747..5761336 (+) | 1590 | WP_064382094.1 | sensor histidine kinase | Regulator |
| AWU82_RS26280 (AWU82_16350) | pilR | 5761333..5762679 (+) | 1347 | WP_064382095.1 | sigma-54-dependent transcriptional regulator | Regulator |
| AWU82_RS26285 (AWU82_16355) | thiO | 5762822..5763922 (-) | 1101 | WP_064382096.1 | glycine oxidase ThiO | - |
| AWU82_RS26290 (AWU82_16360) | - | 5763980..5764381 (-) | 402 | WP_064382097.1 | type IV pilin protein | - |
| AWU82_RS26295 (AWU82_16365) | - | 5764397..5767489 (-) | 3093 | WP_064382098.1 | pilus assembly protein | - |
Sequence
Protein
Download Length: 448 a.a. Molecular weight: 50081.34 Da Isoelectric Point: 6.8815
>NTDB_id=169395 AWU82_RS26280 WP_064382095.1 5761333..5762679(+) (pilR) [Pseudomonas glycinae strain MS586]
MNTSPRQKILIVDDEPDIRELLEITLGRMKLDTFSARNLAEAQALLHRESFDLCLTDMRLPDGTGLELVQHIQQRYPQLP
VAMITAYGSLETAINALKAGAFDFLTKPVDLTRLRELVGSALRMPPAGNVCTSIDRRLLGESPPMRNLRKQIDKLARSQA
PVYISGESGSGKELVARLIHEQGPRASRPFVPVNCGAIPSELMESEFFGHRKGSFSGAVEDKPGLFQAAHGGTLFLDEVA
DLPLPMQVKLLRAIQEKAVRSVGGQQETVVDVRILCATHKDLDAEVAAERFRQDLYYRLNVIELRVPSLRERREDIEALA
GHVLRRLANGTGQPAARLHPHALEALKNYRFPGNVRELENVLERAHTLCENHTIEAEDLRLSEGNSAAEGGVADLTRIDN
LEDYLESVERKLILQALEETRWNRTAAAQRLSLSFRSMRYRLKKLGLD
MNTSPRQKILIVDDEPDIRELLEITLGRMKLDTFSARNLAEAQALLHRESFDLCLTDMRLPDGTGLELVQHIQQRYPQLP
VAMITAYGSLETAINALKAGAFDFLTKPVDLTRLRELVGSALRMPPAGNVCTSIDRRLLGESPPMRNLRKQIDKLARSQA
PVYISGESGSGKELVARLIHEQGPRASRPFVPVNCGAIPSELMESEFFGHRKGSFSGAVEDKPGLFQAAHGGTLFLDEVA
DLPLPMQVKLLRAIQEKAVRSVGGQQETVVDVRILCATHKDLDAEVAAERFRQDLYYRLNVIELRVPSLRERREDIEALA
GHVLRRLANGTGQPAARLHPHALEALKNYRFPGNVRELENVLERAHTLCENHTIEAEDLRLSEGNSAAEGGVADLTRIDN
LEDYLESVERKLILQALEETRWNRTAAAQRLSLSFRSMRYRLKKLGLD
Nucleotide
Download Length: 1347 bp
>NTDB_id=169395 AWU82_RS26280 WP_064382095.1 5761333..5762679(+) (pilR) [Pseudomonas glycinae strain MS586]
TTGAACACGAGCCCACGGCAAAAAATCCTCATCGTCGACGACGAGCCGGATATCCGCGAACTCCTGGAAATCACCCTGGG
ACGGATGAAACTCGACACCTTCAGCGCACGCAATCTCGCAGAAGCCCAGGCGCTGCTGCACCGCGAGAGTTTCGATCTGT
GCCTGACCGACATGCGCCTGCCCGACGGCACCGGCCTGGAGCTGGTGCAGCACATCCAGCAACGTTATCCACAACTGCCG
GTGGCGATGATTACCGCCTACGGTAGCCTGGAAACGGCGATCAACGCCCTGAAGGCCGGGGCTTTCGACTTCCTCACCAA
ACCGGTGGACCTGACGCGTCTGCGCGAGCTGGTCGGCTCGGCGTTGCGCATGCCGCCGGCGGGTAATGTCTGCACCTCGA
TCGACCGCCGGTTGCTTGGCGAATCGCCGCCGATGCGCAACCTGCGCAAACAGATCGACAAACTGGCTCGCAGCCAGGCA
CCGGTCTACATCAGTGGCGAGTCCGGCAGCGGCAAGGAGCTGGTGGCCCGACTGATTCATGAACAGGGCCCGCGCGCCAG
CCGGCCATTCGTGCCGGTGAACTGCGGGGCGATTCCTTCAGAGCTGATGGAGAGCGAATTCTTCGGCCACCGCAAAGGCA
GTTTCAGCGGTGCGGTGGAGGATAAACCGGGACTGTTTCAGGCAGCCCACGGTGGCACGCTGTTTCTTGACGAGGTGGCG
GACCTGCCGCTGCCGATGCAGGTCAAGCTGCTGCGGGCGATCCAGGAAAAAGCCGTGCGCAGCGTCGGCGGTCAACAGGA
AACCGTGGTTGATGTGCGCATCCTTTGCGCGACGCACAAGGACCTCGACGCGGAAGTGGCTGCCGAGCGCTTTCGTCAGG
ATCTGTATTACCGGTTGAACGTGATCGAACTGCGTGTGCCGTCCCTGCGCGAACGTCGCGAGGACATCGAAGCACTGGCC
GGCCATGTACTCAGGCGCCTGGCCAATGGCACCGGACAACCGGCGGCACGTCTTCATCCCCATGCCCTTGAGGCGCTGAA
AAACTACCGCTTTCCGGGTAACGTGCGGGAACTGGAGAACGTGCTCGAACGGGCGCACACCCTGTGTGAAAACCACACGA
TCGAGGCCGAGGATTTACGCCTGAGTGAGGGCAACAGTGCCGCCGAGGGCGGGGTCGCAGATCTCACCCGGATCGACAAC
CTCGAAGACTATCTTGAGAGCGTCGAGCGCAAACTGATTCTGCAGGCACTGGAAGAGACCCGCTGGAATCGCACGGCGGC
GGCGCAGCGGTTGAGTCTGTCGTTTCGGTCGATGCGCTACAGGCTCAAGAAGCTCGGGCTGGACTGA
TTGAACACGAGCCCACGGCAAAAAATCCTCATCGTCGACGACGAGCCGGATATCCGCGAACTCCTGGAAATCACCCTGGG
ACGGATGAAACTCGACACCTTCAGCGCACGCAATCTCGCAGAAGCCCAGGCGCTGCTGCACCGCGAGAGTTTCGATCTGT
GCCTGACCGACATGCGCCTGCCCGACGGCACCGGCCTGGAGCTGGTGCAGCACATCCAGCAACGTTATCCACAACTGCCG
GTGGCGATGATTACCGCCTACGGTAGCCTGGAAACGGCGATCAACGCCCTGAAGGCCGGGGCTTTCGACTTCCTCACCAA
ACCGGTGGACCTGACGCGTCTGCGCGAGCTGGTCGGCTCGGCGTTGCGCATGCCGCCGGCGGGTAATGTCTGCACCTCGA
TCGACCGCCGGTTGCTTGGCGAATCGCCGCCGATGCGCAACCTGCGCAAACAGATCGACAAACTGGCTCGCAGCCAGGCA
CCGGTCTACATCAGTGGCGAGTCCGGCAGCGGCAAGGAGCTGGTGGCCCGACTGATTCATGAACAGGGCCCGCGCGCCAG
CCGGCCATTCGTGCCGGTGAACTGCGGGGCGATTCCTTCAGAGCTGATGGAGAGCGAATTCTTCGGCCACCGCAAAGGCA
GTTTCAGCGGTGCGGTGGAGGATAAACCGGGACTGTTTCAGGCAGCCCACGGTGGCACGCTGTTTCTTGACGAGGTGGCG
GACCTGCCGCTGCCGATGCAGGTCAAGCTGCTGCGGGCGATCCAGGAAAAAGCCGTGCGCAGCGTCGGCGGTCAACAGGA
AACCGTGGTTGATGTGCGCATCCTTTGCGCGACGCACAAGGACCTCGACGCGGAAGTGGCTGCCGAGCGCTTTCGTCAGG
ATCTGTATTACCGGTTGAACGTGATCGAACTGCGTGTGCCGTCCCTGCGCGAACGTCGCGAGGACATCGAAGCACTGGCC
GGCCATGTACTCAGGCGCCTGGCCAATGGCACCGGACAACCGGCGGCACGTCTTCATCCCCATGCCCTTGAGGCGCTGAA
AAACTACCGCTTTCCGGGTAACGTGCGGGAACTGGAGAACGTGCTCGAACGGGCGCACACCCTGTGTGAAAACCACACGA
TCGAGGCCGAGGATTTACGCCTGAGTGAGGGCAACAGTGCCGCCGAGGGCGGGGTCGCAGATCTCACCCGGATCGACAAC
CTCGAAGACTATCTTGAGAGCGTCGAGCGCAAACTGATTCTGCAGGCACTGGAAGAGACCCGCTGGAATCGCACGGCGGC
GGCGCAGCGGTTGAGTCTGTCGTTTCGGTCGATGCGCTACAGGCTCAAGAAGCTCGGGCTGGACTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilR | Pseudomonas aeruginosa PAK |
79.91 |
98.884 |
0.79 |
| pilR | Acinetobacter baumannii strain A118 |
48.366 |
100 |
0.496 |