Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   A4W85_RS05985 Genome accession   NZ_CP017570
Coordinates   1169493..1171370 (-) Length   625 a.a.
NCBI ID   WP_056947880.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain TMW 1.578     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1164493..1176370
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4W85_RS05955 (A4W85_05900) - 1164733..1165356 (+) 624 WP_056947870.1 helix-turn-helix transcriptional regulator -
  A4W85_RS05960 (A4W85_05905) - 1165376..1166173 (+) 798 WP_056947872.1 pyruvate, water dikinase regulatory protein -
  A4W85_RS05965 (A4W85_05910) - 1166295..1166540 (+) 246 WP_011374843.1 hypothetical protein -
  A4W85_RS05970 (A4W85_05915) - 1166591..1167235 (-) 645 WP_056947874.1 HD domain-containing protein -
  A4W85_RS05975 (A4W85_05920) manA 1167309..1168283 (-) 975 WP_056947876.1 mannose-6-phosphate isomerase, class I -
  A4W85_RS05980 (A4W85_05925) - 1168385..1169395 (-) 1011 WP_251944609.1 serine hydrolase domain-containing protein -
  A4W85_RS05985 (A4W85_05930) rcrQ 1169493..1171370 (-) 1878 WP_056947880.1 ABC transporter ATP-binding protein Regulator
  A4W85_RS05990 (A4W85_05935) rcrP 1171370..1173100 (-) 1731 WP_251944611.1 ABC transporter ATP-binding protein Regulator
  A4W85_RS05995 (A4W85_05940) - 1173124..1173765 (-) 642 WP_016265275.1 TetR family transcriptional regulator -
  A4W85_RS06000 (A4W85_05945) - 1173970..1174698 (+) 729 WP_011374850.1 ion transporter -
  A4W85_RS06005 (A4W85_05950) - 1174896..1175096 (-) 201 WP_004270328.1 cold-shock protein -
  A4W85_RS06010 (A4W85_05955) - 1175298..1175954 (+) 657 WP_011374851.1 type II CAAX endopeptidase family protein -
  A4W85_RS06015 (A4W85_05960) - 1175975..1176295 (+) 321 WP_011374852.1 hypothetical protein -

Sequence

Protein


Download         Length: 625 a.a.        Molecular weight: 69752.21 Da        Isoelectric Point: 5.3652

>NTDB_id=169370 A4W85_RS05985 WP_056947880.1 1169493..1171370(-) (rcrQ) [Latilactobacillus sakei strain TMW 1.578]
MAEKAATNRPQGGHGPGRGMGGVVEKPKNFWGTTNRLLKYMSSRLIALVFVIVLAIVSVIFQIRTPKVLGEATTEIFKGV
MKGNAMQKAGIAMDRLPIDFDKIQHIIMTVILMYLASAVFSFLQQFIMTRISQQTVYELRKELKDKMQRVPINYYDTHSN
GDIMSRAINDMDNIASTLQQSLTQMVTSTVTFIGVLWMMLTISWQLTLIALVTIPLSLIVIGIVAPKSQKFFAAQQKSLG
LLNNQIEENFSGQVVLKTFNREQVTIDTFEEQNEKLYKAAWKAQFISGVIMPLMTFVNNLGYVFVAIIGGIRVSHGQVTL
GDMQAFMQYTQQFSQPISQLANLANTIQSTIASAERVFAVLDEEDMSEEPSTVPVVQDDANQLEMEHVEFGYQGKDLLLT
DYNLQVKPGQMIAIVGPTGAGKTTIINLLERFYDVSGGSIKLKGVDTRDMSREELRRHFAMVLQDTWLFTGTIWDNLKYG
NESASDEAILAAAKAAHVDGFVRQLPEGYNTVLNEEASNISQGQRQLLTIARAFVADPDILILDEATSSVDTRTEIHIQH
AMERLLQNRTSFVVAHRLSTIRDADNIIVMNHGSIMETGTHDELMVQDGFYADLYNSQFSGNVEI

Nucleotide


Download         Length: 1878 bp        

>NTDB_id=169370 A4W85_RS05985 WP_056947880.1 1169493..1171370(-) (rcrQ) [Latilactobacillus sakei strain TMW 1.578]
ATGGCAGAAAAAGCAGCAACAAACCGGCCACAAGGTGGTCACGGTCCAGGTCGCGGCATGGGTGGCGTCGTTGAAAAGCC
TAAGAATTTCTGGGGCACAACTAATCGTTTATTGAAATACATGTCGAGCCGTTTAATTGCCTTAGTATTTGTCATTGTTT
TGGCGATTGTCTCCGTTATTTTCCAAATTAGAACGCCCAAAGTTTTAGGGGAAGCAACAACTGAAATCTTTAAAGGGGTG
ATGAAAGGCAATGCCATGCAAAAAGCTGGGATTGCAATGGATCGCTTACCAATTGATTTCGATAAGATTCAACACATTAT
CATGACGGTGATCTTGATGTATCTTGCTTCAGCCGTCTTCAGTTTCTTACAACAATTTATTATGACGCGGATTTCACAAC
AAACCGTCTATGAATTGCGTAAGGAATTGAAAGATAAGATGCAACGGGTGCCAATCAATTATTACGATACCCATTCAAAC
GGGGATATCATGAGTCGTGCGATTAATGATATGGATAATATTGCCAGCACGCTACAACAAAGTTTAACGCAAATGGTGAC
CAGCACGGTAACGTTTATCGGTGTTTTATGGATGATGCTGACGATCAGTTGGCAATTAACGCTGATCGCTTTGGTCACAA
TTCCGTTGAGTTTAATTGTCATTGGGATTGTCGCACCTAAGTCGCAAAAATTCTTTGCTGCACAACAAAAGAGTTTAGGC
TTATTAAATAATCAAATCGAAGAAAACTTTTCGGGTCAAGTGGTCTTGAAGACCTTTAACCGGGAACAAGTGACGATTGA
TACATTTGAAGAACAAAATGAAAAGTTGTATAAAGCTGCTTGGAAAGCCCAATTTATCTCTGGTGTGATCATGCCATTGA
TGACTTTCGTCAATAACTTAGGGTACGTCTTCGTGGCGATTATCGGTGGGATTCGCGTCTCACACGGTCAAGTCACATTA
GGGGACATGCAAGCTTTCATGCAATATACACAACAATTCTCACAACCAATCTCACAATTGGCTAACTTGGCAAACACAAT
TCAATCAACGATTGCTTCAGCTGAACGGGTTTTTGCTGTTTTAGATGAAGAAGATATGTCTGAAGAACCTTCAACTGTCC
CAGTGGTGCAAGATGATGCCAACCAATTAGAAATGGAACATGTTGAATTTGGTTACCAAGGCAAGGATCTTTTATTGACG
GACTATAATTTACAAGTTAAACCGGGCCAAATGATCGCGATTGTTGGTCCTACCGGGGCTGGTAAGACAACTATTATTAA
TTTACTTGAACGCTTCTACGATGTTAGTGGCGGTTCGATTAAATTAAAAGGTGTTGATACCCGTGACATGAGTCGTGAAG
AATTACGGCGTCATTTTGCGATGGTTCTGCAAGATACTTGGCTATTCACCGGGACGATTTGGGATAACTTGAAATATGGT
AATGAATCAGCTTCTGACGAAGCAATTTTGGCAGCTGCTAAAGCGGCCCATGTTGACGGCTTTGTTCGTCAATTACCGGA
AGGTTATAACACAGTCTTGAATGAAGAAGCTTCCAACATTTCACAAGGTCAACGGCAATTATTGACGATTGCCCGGGCCT
TTGTGGCCGATCCAGATATCTTAATCTTGGATGAAGCAACTAGTTCGGTTGATACGCGGACTGAAATTCATATCCAACAC
GCAATGGAACGGCTATTACAAAATCGAACGAGTTTCGTTGTTGCCCATCGTTTATCAACGATTCGGGATGCGGATAATAT
CATTGTGATGAATCACGGTTCAATTATGGAAACCGGCACACATGATGAATTGATGGTTCAAGACGGCTTTTACGCTGATC
TATATAACAGCCAATTCTCAGGGAACGTCGAGATTTAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(49-336)

ABC transporter (ABC_tran)

(399-548)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

44.464

92.48

0.411

Multiple sequence alignment