Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   AWU82_RS01280 Genome accession   NZ_CP014205
Coordinates   278969..279604 (-) Length   211 a.a.
NCBI ID   WP_163976130.1    Uniprot ID   -
Organism   Pseudomonas glycinae strain MS586     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 273969..284604
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AWU82_RS01245 (AWU82_24810) - 274365..274835 (-) 471 WP_039770687.1 (2Fe-2S)-binding protein -
  AWU82_RS01250 (AWU82_24815) murB 275083..276102 (-) 1020 WP_064383499.1 UDP-N-acetylmuramate dehydrogenase -
  AWU82_RS01255 (AWU82_24820) - 276099..276563 (-) 465 WP_007950772.1 low molecular weight protein-tyrosine-phosphatase -
  AWU82_RS01260 (AWU82_24825) kdsB 276563..277327 (-) 765 WP_064383500.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  AWU82_RS01265 (AWU82_24830) - 277324..277509 (-) 186 WP_003179363.1 Trm112 family protein -
  AWU82_RS01270 (AWU82_24835) lpxK 277534..278544 (-) 1011 WP_064383502.1 tetraacyldisaccharide 4'-kinase -
  AWU82_RS01275 (AWU82_24840) - 278544..278972 (-) 429 WP_064383505.1 ExbD/TolR family protein -
  AWU82_RS01280 (AWU82_24845) exbB 278969..279604 (-) 636 WP_163976130.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  AWU82_RS01285 (AWU82_24850) comA 279683..281926 (-) 2244 WP_064383507.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  AWU82_RS01290 (AWU82_24855) - 282063..282581 (+) 519 WP_064383508.1 DUF2062 domain-containing protein -
  AWU82_RS01295 (AWU82_24860) - 282636..283415 (-) 780 WP_011335453.1 ABC transporter permease -
  AWU82_RS01300 (AWU82_24865) - 283412..284344 (-) 933 WP_011335454.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22826.97 Da        Isoelectric Point: 7.3615

>NTDB_id=169369 AWU82_RS01280 WP_163976130.1 278969..279604(-) (exbB) [Pseudomonas glycinae strain MS586]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYVNALGTIAAMSPLLGLLGTVLGMIDIFSAFTGSGMTTNAAVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=169369 AWU82_RS01280 WP_163976130.1 278969..279604(-) (exbB) [Pseudomonas glycinae strain MS586]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATCGCCGCCATGGCGATCGTCGC
CGAGCGCCTGTGGACCCTGCGCGCCAGTCGCGTCACCCCTGAGCATTTGCTGGGTCAGGTCTGGGTCTGGATCAAGGACA
AGCAGCTCAACAAGGAAAAGCTCAAGGAATTGCGCGCCAACTCGCCGCTGGGGGAAATCCTCGCTGCGGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAGGAGTGCATCGAAGAGGCCGCCGCCCGGGTCATCCACGAGCTGGAGCGCTACGT
CAACGCGCTGGGCACCATCGCCGCCATGTCGCCGCTGCTCGGTCTGCTGGGCACGGTGCTGGGCATGATCGATATTTTCA
GCGCCTTCACCGGTTCCGGCATGACCACCAATGCGGCGGTGCTGGCCGGCGGTATTTCCAAGGCGCTGATCACCACTGCT
GCGGGCCTGATGGTCGGTATTCCGGCAGTGTTCTTCCACCGTTTCCTGCAACGCCGCATCGATGAACTGGTGGTGGGCAT
GGAACAGGAAGCGATCAAACTGGTGGAAGTGGTGCAGGGCGACCGTGACGTCGATCTGGCCGGGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.834

100

0.848

Multiple sequence alignment