Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccpA   Type   Regulator
Locus tag   A4W83_RS02175 Genome accession   NZ_CP017566
Coordinates   440498..441499 (+) Length   333 a.a.
NCBI ID   WP_016264677.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain TMW 1.114     
Function   regulate comCDE transcription and transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 435498..446499
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4W83_RS02150 (A4W83_02105) - 435929..436825 (-) 897 WP_056947934.1 DUF368 domain-containing protein -
  A4W83_RS02155 (A4W83_02110) - 436850..437737 (-) 888 WP_011374119.1 mechanosensitive ion channel family protein -
  A4W83_RS02160 (A4W83_02115) - 437895..438329 (+) 435 WP_016264674.1 DUF948 domain-containing protein -
  A4W83_RS02165 (A4W83_02120) - 438335..438772 (+) 438 WP_056947938.1 YtxH domain-containing protein -
  A4W83_RS02170 (A4W83_02125) - 439184..440281 (-) 1098 WP_056947940.1 M24 family metallopeptidase -
  A4W83_RS02175 (A4W83_02130) ccpA 440498..441499 (+) 1002 WP_016264677.1 catabolite control protein A Regulator
  A4W83_RS02180 (A4W83_02135) - 441548..444103 (-) 2556 WP_056947942.1 transglycosylase domain-containing protein -
  A4W83_RS02185 (A4W83_02140) - 444387..445094 (+) 708 WP_011374126.1 glucosamine-6-phosphate deaminase -
  A4W83_RS02190 (A4W83_02145) - 445265..445969 (-) 705 WP_056947447.1 DUF4811 domain-containing protein -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 36333.50 Da        Isoelectric Point: 4.7948

>NTDB_id=169171 A4W83_RS02175 WP_016264677.1 440498..441499(+) (ccpA) [Latilactobacillus sakei strain TMW 1.114]
MEKQTITIYDVAREADVSMATVSRVVNGNPNVKPATRKKVLEVIDRLDYRPNAVARGLASKKTTTVGVIIPDVSDIYFAS
LARGIDDVATMYKYNIILANSDENNQKEVQVLNTLLAKQVDGLIYMGHSISDAIRAEFARSKTPIVLAGSIDPDEQVGSV
NIDYVAAVKDATLKLIKNGNEKVAFICGNLDFPINSKYRLRGYKDALNEAGIPYDESLIFETEYSYSAGEALFGKVQATG
ATAAVVSDDELAVGVLNAAVDAGVNIPTDFEIVTSNNTKLTEMVRPKMTSISQPLYDMGAVGMRLLTKMMNKEEIDDKTI
LLPYSIVDRQSTK

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=169171 A4W83_RS02175 WP_016264677.1 440498..441499(+) (ccpA) [Latilactobacillus sakei strain TMW 1.114]
ATGGAAAAACAAACAATTACAATTTACGACGTTGCGCGTGAAGCTGACGTATCAATGGCGACCGTCTCACGGGTTGTTAA
CGGGAACCCCAACGTTAAGCCTGCCACTCGCAAGAAAGTGCTTGAAGTGATCGACCGTTTAGACTATCGTCCTAATGCTG
TTGCTCGTGGTTTGGCAAGTAAGAAAACAACAACTGTTGGGGTTATTATCCCAGACGTTAGTGATATCTACTTTGCTTCA
TTAGCACGCGGGATTGATGATGTTGCTACAATGTACAAGTACAACATCATTTTAGCGAACTCAGATGAAAACAACCAAAA
GGAAGTTCAAGTATTGAATACCTTATTGGCAAAACAAGTGGATGGTTTAATCTACATGGGTCACAGTATCTCAGATGCAA
TCCGTGCTGAATTCGCCCGTTCTAAGACACCAATCGTATTAGCTGGTTCAATCGATCCAGACGAACAAGTCGGTAGTGTT
AATATTGACTACGTTGCAGCCGTTAAGGACGCAACTTTGAAGTTAATCAAGAACGGTAACGAAAAAGTCGCCTTCATCTG
TGGCAACTTAGATTTTCCAATCAACAGCAAATATCGTTTACGTGGCTATAAAGATGCCTTGAACGAAGCTGGTATTCCTT
ATGACGAAAGCTTAATTTTCGAAACAGAATACAGTTACAGTGCTGGTGAAGCCTTATTCGGTAAGGTTCAAGCAACTGGC
GCAACTGCTGCTGTTGTCAGTGACGATGAATTAGCCGTAGGTGTTTTAAATGCTGCTGTTGATGCAGGTGTTAATATTCC
AACTGACTTTGAAATTGTGACAAGTAATAACACGAAGTTAACTGAAATGGTTCGTCCTAAGATGACATCAATCTCACAAC
CTTTATATGATATGGGTGCTGTTGGGATGCGTCTGTTAACGAAGATGATGAACAAAGAAGAAATCGATGATAAGACAATC
CTATTGCCATATAGCATTGTTGATCGTCAATCAACTAAATAA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(175-332)

Bacterial regulatory proteins, lacI family (LacI)

(7-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus pneumoniae D39

62.31

98.799

0.616
  ccpA Streptococcus gordonii str. Challis substr. CH1

60.486

98.799

0.598
  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

56.456

100

0.565