Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   PcP3B5_RS05130 Genome accession   NZ_CP014158
Coordinates   1116333..1117670 (-) Length   445 a.a.
NCBI ID   WP_061560713.1    Uniprot ID   -
Organism   Pseudomonas citronellolis strain P3B5     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1111333..1122670
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PcP3B5_RS05100 (PcP3B5_10410) - 1111987..1112520 (-) 534 WP_043318034.1 pilus assembly PilX family protein -
  PcP3B5_RS05105 (PcP3B5_10420) - 1112517..1113296 (-) 780 WP_061560709.1 PilW family protein -
  PcP3B5_RS05110 (PcP3B5_10430) pilV 1113308..1113862 (-) 555 WP_061560710.1 type IV pilus modification protein PilV -
  PcP3B5_RS05115 (PcP3B5_10440) - 1113859..1114338 (-) 480 WP_061560711.1 GspH/FimT family pseudopilin -
  PcP3B5_RS05120 (PcP3B5_10450) - 1114488..1115000 (-) 513 WP_009617575.1 GspH/FimT family protein -
  PcP3B5_RS05125 (PcP3B5_10460) thiO 1115179..1116288 (+) 1110 WP_061560712.1 glycine oxidase ThiO -
  PcP3B5_RS05130 (PcP3B5_10470) pilR 1116333..1117670 (-) 1338 WP_061560713.1 sigma-54-dependent transcriptional regulator Regulator
  PcP3B5_RS05135 (PcP3B5_10480) pilS 1117682..1119271 (-) 1590 WP_043273654.1 sensor histidine kinase Regulator
  PcP3B5_RS05140 (PcP3B5_10490) - 1119264..1119494 (-) 231 WP_061560714.1 PP0621 family protein -
  PcP3B5_RS05145 (PcP3B5_10500) - 1119633..1120646 (-) 1014 WP_009617585.1 outer membrane protein assembly factor BamD -
  PcP3B5_RS05150 (PcP3B5_10510) rluD 1120793..1121752 (+) 960 WP_061560715.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  PcP3B5_RS05155 (PcP3B5_10520) pgeF 1121749..1122477 (+) 729 WP_061560716.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 445 a.a.        Molecular weight: 49565.83 Da        Isoelectric Point: 5.6352

>NTDB_id=168919 PcP3B5_RS05130 WP_061560713.1 1116333..1117670(-) (pilR) [Pseudomonas citronellolis strain P3B5]
MSRQKALIVDDEPDIRELLEITLGRMKLDTRSARNVKEAKEYLAREPFDLCLTDMRLPDGTGMDLVQHIQQRHPQVPVAM
ITAFGSLDTAVNALKAGAFDFLTKPVDLGRLRELVATALRLRSPGAEDAPVDNRLLGDSPPMRQMRNQIAKLARSQAPVY
ISGESGSGKELVARLIHEQGPRSEVAFVPVNCGAIPSELMESEFFGHKKGSFTGAVEDKQGLFQAANGGTLFLDEVADLP
LPMQVKLLRAIQEKAVRAVGGQQEVAVDVRVLCATHKDLAAEVAAGRFRQDLYYRLNVIELRVPPLRERREDIPLLTERV
LKRLANDSGLAAAQVSPEALEKLKSYRFPGNVRELENMLERAYTLCEDDVIQPQDLRFAEATGGGESGEASLAQIDNLED
YLEEIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGID

Nucleotide


Download         Length: 1338 bp        

>NTDB_id=168919 PcP3B5_RS05130 WP_061560713.1 1116333..1117670(-) (pilR) [Pseudomonas citronellolis strain P3B5]
ATGAGCCGGCAAAAAGCCCTGATCGTCGACGACGAACCGGATATCCGCGAGCTGCTGGAGATCACCCTCGGCCGCATGAA
GCTGGACACCCGCAGCGCCCGCAACGTCAAGGAGGCCAAGGAATACCTGGCCCGCGAGCCCTTCGACCTGTGCCTGACCG
ACATGCGCCTGCCCGACGGCACCGGCATGGACCTGGTGCAGCACATCCAGCAGCGCCACCCGCAGGTGCCGGTGGCCATG
ATCACCGCCTTCGGCAGCCTGGACACCGCGGTCAACGCGCTCAAGGCCGGCGCCTTCGACTTCCTCACCAAGCCGGTGGA
CCTCGGCCGCCTGCGCGAACTGGTGGCCACGGCCCTGCGCCTGCGCTCGCCGGGCGCGGAAGACGCGCCGGTGGACAACC
GCCTGCTGGGCGACTCGCCGCCCATGCGGCAGATGCGCAACCAGATCGCCAAGCTGGCGCGCAGCCAGGCGCCGGTCTAC
ATCAGCGGCGAATCCGGCAGCGGCAAGGAGCTGGTGGCCCGGCTGATCCACGAGCAGGGCCCGCGCAGCGAAGTGGCCTT
CGTCCCGGTGAACTGTGGCGCCATTCCGTCCGAGCTGATGGAAAGCGAATTCTTCGGGCACAAGAAAGGCAGCTTCACCG
GCGCCGTGGAAGACAAGCAGGGCCTGTTCCAGGCCGCCAATGGCGGCACCCTGTTCCTCGACGAAGTGGCCGACCTGCCC
TTGCCGATGCAGGTGAAACTGCTGCGCGCCATCCAGGAAAAAGCCGTGCGCGCGGTGGGCGGCCAGCAGGAAGTGGCGGT
GGACGTGCGCGTGCTCTGTGCCACCCACAAGGACCTGGCTGCGGAAGTCGCCGCCGGCCGCTTCCGCCAGGACCTCTACT
ACCGCCTGAACGTCATCGAACTGCGCGTGCCGCCGCTGCGCGAGCGCCGCGAGGACATCCCTCTGCTCACCGAGCGCGTG
CTCAAGCGCCTGGCCAACGACAGCGGCCTGGCCGCGGCGCAGGTCAGCCCCGAAGCCCTGGAAAAGCTCAAGAGCTACCG
TTTCCCGGGCAACGTGCGCGAACTGGAGAACATGCTCGAACGCGCCTACACCCTGTGCGAAGACGATGTCATCCAGCCCC
AGGACCTGCGTTTCGCCGAGGCCACCGGCGGCGGCGAAAGCGGCGAGGCCAGCCTGGCGCAGATCGACAACCTCGAGGAC
TACCTCGAAGAGATCGAGCGCAAGCTGATCATGCAGGCGCTGGAAGAAACCCGCTGGAACCGTACCGCCGCGGCCCAGCG
GCTGGGGCTGACGTTCCGTTCGATGCGCTATCGCTTGAAGAAGCTGGGGATCGATTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(7-115)

Bacterial regulatory protein, Fis family (HTH_8)

(402-442)

Sigma-54 interaction domain (Sigma54_activat)

(136-301)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

88.764

100

0.888
  pilR Acinetobacter baumannii strain A118

49.891

100

0.515

Multiple sequence alignment