Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   PcP3B5_RS05135 Genome accession   NZ_CP014158
Coordinates   1117682..1119271 (-) Length   529 a.a.
NCBI ID   WP_043273654.1    Uniprot ID   A0A1A5D6Q3
Organism   Pseudomonas citronellolis strain P3B5     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1112682..1124271
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PcP3B5_RS05110 (PcP3B5_10430) pilV 1113308..1113862 (-) 555 WP_061560710.1 type IV pilus modification protein PilV -
  PcP3B5_RS05115 (PcP3B5_10440) - 1113859..1114338 (-) 480 WP_061560711.1 GspH/FimT family pseudopilin -
  PcP3B5_RS05120 (PcP3B5_10450) - 1114488..1115000 (-) 513 WP_009617575.1 GspH/FimT family protein -
  PcP3B5_RS05125 (PcP3B5_10460) thiO 1115179..1116288 (+) 1110 WP_061560712.1 glycine oxidase ThiO -
  PcP3B5_RS05130 (PcP3B5_10470) pilR 1116333..1117670 (-) 1338 WP_061560713.1 sigma-54-dependent transcriptional regulator Regulator
  PcP3B5_RS05135 (PcP3B5_10480) pilS 1117682..1119271 (-) 1590 WP_043273654.1 sensor histidine kinase Regulator
  PcP3B5_RS05140 (PcP3B5_10490) - 1119264..1119494 (-) 231 WP_061560714.1 PP0621 family protein -
  PcP3B5_RS05145 (PcP3B5_10500) - 1119633..1120646 (-) 1014 WP_009617585.1 outer membrane protein assembly factor BamD -
  PcP3B5_RS05150 (PcP3B5_10510) rluD 1120793..1121752 (+) 960 WP_061560715.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  PcP3B5_RS05155 (PcP3B5_10520) pgeF 1121749..1122477 (+) 729 WP_061560716.1 peptidoglycan editing factor PgeF -
  PcP3B5_RS31795 - 1122578..1122742 (+) 165 WP_160336925.1 hypothetical protein -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58463.49 Da        Isoelectric Point: 7.2738

>NTDB_id=168920 PcP3B5_RS05135 WP_043273654.1 1117682..1119271(-) (pilS) [Pseudomonas citronellolis strain P3B5]
MAKAIPISGQQGQRILRLYHLYRLSIGLLLVLLISSDLDDRVLNVGQSALFHASCWSYLIVNILIAVLMPTPRQLLPIFL
LALFDILALCGLFYAAGGVPSGIGNLLVVAVGIANILLRGRIGLLIAAVAAIGMIYLTFYLSLSQPTAINHYVQAGSLGA
LSFAAALLLQGLARRQQLTEHLAEERATTVANLEELNALILQRMRTGILVLDSRHRVLLANQSALGLLAQPELAGKLATE
HCPELLDSLQQWERNPSLRPPSLQAPEGGPMLQPSFIPLRRGEEQHTLVFLEDISQIAQQAQQLKLAALGRLTAGIAHEI
RNPLGAISHAAQLLQESETLDAPDRRLTQIIQDQSRRMNLVIENVLQLSRRRQAEPQQLDLRQWLQRFTDEQREGLRGDQ
QIHLQMGGGEIQTRMDPSQLTQVLGNLVQNGLRYSARQNGSGQVWLNLFRDRDSDLPVLEVLDDGPGIAPEQLGKLFEPF
FTTESKGTGLGLYISRELCESNQARIDFKNRDEGGGSFRITFAHPRKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=168920 PcP3B5_RS05135 WP_043273654.1 1117682..1119271(-) (pilS) [Pseudomonas citronellolis strain P3B5]
ATGGCTAAGGCCATCCCCATCAGCGGCCAGCAGGGGCAGCGCATCCTCCGCCTGTATCACCTGTACCGCCTGAGCATCGG
CCTGCTGCTGGTGCTGCTGATTTCCAGCGACCTCGACGACCGCGTGCTCAACGTCGGCCAGTCGGCGCTGTTCCATGCCA
GTTGCTGGAGCTACCTGATCGTCAACATCCTGATCGCCGTGCTGATGCCGACGCCGCGCCAGCTGCTGCCGATCTTCCTC
CTGGCGCTGTTCGACATCCTCGCGCTGTGCGGCCTGTTCTACGCCGCCGGCGGCGTGCCCAGCGGCATCGGCAACCTGCT
GGTGGTGGCGGTGGGCATCGCCAACATCCTGCTGCGCGGGCGCATCGGCCTGCTGATCGCCGCCGTCGCCGCGATCGGCA
TGATCTACCTGACCTTCTACCTCAGCCTCAGCCAGCCCACGGCGATCAACCACTACGTCCAGGCCGGCAGCCTCGGCGCC
CTGAGCTTCGCCGCAGCGCTGCTGCTGCAGGGCCTGGCGCGGCGCCAGCAACTCACCGAGCACCTGGCCGAGGAACGCGC
CACCACCGTGGCCAACCTCGAAGAACTCAACGCCCTCATCCTGCAGCGCATGCGCACCGGCATTCTGGTGCTGGACAGCC
GGCACCGCGTGCTGCTGGCCAACCAGAGCGCCCTGGGCCTGCTGGCCCAGCCGGAACTGGCGGGCAAGCTCGCCACCGAG
CATTGCCCGGAGCTGCTCGACAGCCTGCAGCAGTGGGAACGCAACCCCTCGCTGCGCCCGCCCAGCCTGCAGGCGCCCGA
AGGCGGCCCCATGCTGCAGCCGAGCTTCATCCCGCTGCGCCGCGGCGAGGAACAGCACACCCTGGTGTTCCTCGAAGACA
TCTCGCAGATCGCCCAGCAGGCCCAGCAGCTCAAGCTGGCGGCCCTGGGCCGGCTGACCGCCGGCATCGCCCACGAGATC
CGCAACCCCCTGGGCGCCATCAGCCACGCCGCGCAGCTGCTGCAGGAGTCCGAAACGCTCGACGCCCCCGACCGGCGCCT
GACGCAGATCATCCAGGACCAGTCGCGACGCATGAACCTGGTGATCGAGAACGTCCTGCAACTGTCGCGGCGACGCCAGG
CCGAGCCGCAACAGCTGGACCTCAGGCAGTGGCTGCAACGCTTCACCGACGAGCAGCGCGAAGGCCTGCGCGGCGACCAG
CAGATCCACCTGCAAATGGGCGGCGGCGAGATCCAGACGCGCATGGACCCCAGCCAACTCACCCAGGTGCTGGGTAACCT
GGTGCAGAATGGGTTACGGTACAGTGCCCGGCAGAACGGCAGCGGCCAGGTGTGGTTGAACCTGTTCCGCGACCGGGACA
GCGACCTGCCGGTGCTGGAGGTGCTCGACGACGGCCCCGGCATCGCCCCGGAGCAGCTGGGCAAGCTGTTCGAACCCTTC
TTCACCACCGAGAGCAAGGGCACCGGGCTGGGCCTGTACATTTCCCGCGAGCTGTGCGAAAGCAACCAGGCCCGCATCGA
CTTCAAGAACCGCGACGAAGGCGGTGGCAGCTTCCGCATCACCTTCGCCCACCCGCGCAAGCAGAGCTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(308-372)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(416-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1A5D6Q3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

73.295

99.811

0.732

Multiple sequence alignment