Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccpA   Type   Regulator
Locus tag   AWB63_RS04185 Genome accession   NZ_CP014144
Coordinates   851606..852607 (-) Length   333 a.a.
NCBI ID   WP_002886078.1    Uniprot ID   A0AB37CMJ0
Organism   Streptococcus salivarius strain JF     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 846606..857607
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AWB63_RS04165 (AWB63_04165) eno 847345..848649 (-) 1305 WP_002886048.1 surface-displayed alpha-enolase -
  AWB63_RS04170 (AWB63_04170) - 848856..849311 (+) 456 WP_002885945.1 YueI family protein -
  AWB63_RS04175 (AWB63_04175) - 849351..850466 (-) 1116 WP_004182927.1 glycerate kinase -
  AWB63_RS04180 (AWB63_04180) - 850479..851546 (-) 1068 WP_002886051.1 MmcQ/YjbR family DNA-binding protein -
  AWB63_RS04185 (AWB63_04185) ccpA 851606..852607 (-) 1002 WP_002886078.1 catabolite control protein A Regulator
  AWB63_RS04190 (AWB63_04190) - 852920..854002 (+) 1083 WP_002886210.1 M24 family metallopeptidase -
  AWB63_RS04195 (AWB63_04195) - 854102..854470 (-) 369 WP_002886108.1 S1 RNA-binding domain-containing protein -
  AWB63_RS04200 (AWB63_04200) - 854472..855878 (-) 1407 WP_004182928.1 Cof-type HAD-IIB family hydrolase -
  AWB63_RS04205 (AWB63_04205) smpB 856025..856489 (-) 465 WP_002885905.1 SsrA-binding protein SmpB -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 36660.58 Da        Isoelectric Point: 5.4827

>NTDB_id=168731 AWB63_RS04185 WP_002886078.1 851606..852607(-) (ccpA) [Streptococcus salivarius strain JF]
MNTDETITIYDVAREAGVSMATVSRVVNGNKNVKENTRKKVLEVIDRLDYRPNAVARGLASKKTTTVGVVIPNIANSYFA
TLARGIDDIATMYKYNIVLASSDENDDHEVTVINSLFAKQVDGIIFMGYHLTEKIRAEFSRTRTPIVLAGTVDLEHQLPS
VNIDYKAAVEDSITQLAKNNEKVAFVSGPLIDDINGKLRLAGYKAGLEKNNLRYNEGLVFEAKYSYKDGFDLAQRVLNSG
ATAAYVGEDELAAGLLNGLFAAGKSVPEDFEIITSNDSPITSYTRPNLSSINHPLYDLGAVSMRMLTKIMNKEELEEKDV
ILNHGITLRQSTK

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=168731 AWB63_RS04185 WP_002886078.1 851606..852607(-) (ccpA) [Streptococcus salivarius strain JF]
ATGAATACTGATGAAACAATTACTATATACGACGTTGCGCGTGAAGCAGGTGTTTCGATGGCGACTGTGTCTCGTGTGGT
AAATGGAAATAAAAATGTAAAAGAAAACACCCGAAAAAAAGTGCTTGAGGTCATTGATCGTTTGGATTACCGTCCAAATG
CGGTTGCGCGTGGCTTGGCGAGTAAGAAAACCACTACTGTAGGAGTTGTCATCCCAAATATTGCTAATAGTTATTTTGCT
ACTTTAGCAAGGGGGATTGATGATATTGCAACCATGTACAAGTATAATATTGTTCTTGCATCTAGTGATGAAAATGACGA
TCACGAAGTTACCGTGATTAACTCTCTATTTGCCAAACAAGTAGACGGTATCATCTTCATGGGTTACCACTTGACGGAAA
AAATTCGTGCAGAATTTTCCCGTACTCGTACGCCGATTGTCCTAGCAGGAACAGTGGACCTCGAACACCAATTACCGAGT
GTTAACATCGACTATAAAGCTGCCGTTGAGGATTCTATAACACAGCTTGCCAAGAATAATGAAAAGGTTGCCTTTGTATC
AGGGCCACTAATTGATGATATTAATGGCAAGCTCCGTCTAGCTGGTTATAAGGCTGGACTTGAAAAGAATAATTTGCGCT
ACAATGAAGGACTAGTCTTTGAAGCTAAATATAGCTATAAAGATGGCTTTGATCTAGCACAACGTGTCTTGAACTCTGGT
GCCACTGCTGCCTATGTTGGAGAAGATGAATTGGCTGCAGGTCTCTTGAATGGCCTCTTTGCTGCAGGTAAATCAGTTCC
AGAAGACTTCGAAATCATCACAAGCAATGACTCACCAATTACAAGCTATACACGTCCAAACCTTTCTAGTATTAATCATC
CTCTCTATGATTTAGGGGCAGTTAGCATGCGTATGTTGACTAAAATCATGAATAAGGAAGAACTTGAAGAAAAAGATGTT
ATTCTTAATCACGGTATTACCTTACGTCAGTCAACAAAATAA

Domains

Predicted by InterproScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(182-332)

Bacterial regulatory proteins, lacI family (LacI)

(8-53)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus gordonii str. Challis substr. CH1

77.778

100

0.778
  ccpA Streptococcus pneumoniae D39

75.676

100

0.757
  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

55.891

99.399

0.556

Multiple sequence alignment