Detailed information
Bioinformatically predicted
Overview
| Name | pilN | Type | Machinery gene |
| Locus tag | AL468_RS20120 | Genome accession | NZ_CP014134 |
| Coordinates | 2276416..2276991 (+) | Length | 191 a.a. |
| NCBI ID | WP_046874634.1 | Uniprot ID | - |
| Organism | Vibrio diabolicus strain FDAARGOS_99 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2271416..2281991
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AL468_RS20105 (AL468_11520) | oxyR | 2271748..2272659 (+) | 912 | WP_005395720.1 | DNA-binding transcriptional regulator OxyR | - |
| AL468_RS20110 (AL468_11525) | - | 2272711..2275272 (-) | 2562 | WP_104974736.1 | PBP1A family penicillin-binding protein | - |
| AL468_RS20115 (AL468_11530) | pilM | 2275416..2276432 (+) | 1017 | WP_005395718.1 | type IV pilus assembly protein PilM | Machinery gene |
| AL468_RS20120 (AL468_11535) | pilN | 2276416..2276991 (+) | 576 | WP_046874634.1 | PilN domain-containing protein | Machinery gene |
| AL468_RS20125 (AL468_11540) | pilO | 2276984..2277577 (+) | 594 | WP_012841351.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| AL468_RS20130 (AL468_11545) | pilP | 2277567..2278082 (+) | 516 | WP_005395715.1 | pilus assembly protein PilP | Machinery gene |
| AL468_RS20135 (AL468_11550) | pilQ | 2278108..2279856 (+) | 1749 | WP_006742777.1 | type IV pilus secretin PilQ family protein | Machinery gene |
| AL468_RS20140 (AL468_11555) | aroK | 2280044..2280562 (+) | 519 | WP_005381319.1 | shikimate kinase AroK | - |
| AL468_RS20145 (AL468_11560) | aroB | 2280595..2281695 (+) | 1101 | WP_012841354.1 | 3-dehydroquinate synthase | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 22353.85 Da Isoelectric Point: 7.0774
>NTDB_id=168575 AL468_RS20120 WP_046874634.1 2276416..2276991(+) (pilN) [Vibrio diabolicus strain FDAARGOS_99]
MLYRINLLPWRENQREEHRRRFISLVALGMLVAIGIQWGIGKFFEYQQDQQQERLDYLTHYIAELDQRIEAMKIAEQEHS
KILERLKVVEGLQNGRNKTTEFMNLMPAVIPEGVYVDKIKMNDLEIEISGISDSTPKLATMLDNMERSAKLNDVEMHSIV
HGKARFGKEFQTFKVSFMFKVPEKKVEAQHG
MLYRINLLPWRENQREEHRRRFISLVALGMLVAIGIQWGIGKFFEYQQDQQQERLDYLTHYIAELDQRIEAMKIAEQEHS
KILERLKVVEGLQNGRNKTTEFMNLMPAVIPEGVYVDKIKMNDLEIEISGISDSTPKLATMLDNMERSAKLNDVEMHSIV
HGKARFGKEFQTFKVSFMFKVPEKKVEAQHG
Nucleotide
Download Length: 576 bp
>NTDB_id=168575 AL468_RS20120 WP_046874634.1 2276416..2276991(+) (pilN) [Vibrio diabolicus strain FDAARGOS_99]
GTGCTTTATCGCATTAATTTACTTCCTTGGCGAGAGAACCAAAGAGAAGAGCACCGACGTCGTTTCATTAGCTTGGTCGC
GTTAGGCATGTTGGTCGCCATTGGTATTCAATGGGGTATTGGAAAGTTTTTTGAGTACCAACAAGATCAGCAGCAGGAGC
GGCTTGATTACCTTACTCACTACATTGCTGAGCTCGACCAGCGTATTGAAGCAATGAAAATCGCCGAGCAAGAGCACAGC
AAAATCCTCGAACGTTTAAAAGTGGTTGAAGGGTTACAAAACGGTAGAAACAAAACGACCGAGTTTATGAACTTGATGCC
AGCCGTCATTCCTGAAGGTGTATATGTCGACAAGATCAAAATGAATGATCTGGAAATTGAGATCTCGGGGATCTCTGATA
GCACTCCAAAACTTGCCACGATGCTGGACAACATGGAGCGTTCGGCCAAGTTGAATGATGTAGAAATGCACTCCATCGTT
CACGGAAAAGCGCGTTTTGGAAAAGAGTTCCAAACGTTCAAAGTGTCTTTCATGTTCAAAGTGCCGGAGAAGAAAGTGGA
GGCCCAGCATGGTTGA
GTGCTTTATCGCATTAATTTACTTCCTTGGCGAGAGAACCAAAGAGAAGAGCACCGACGTCGTTTCATTAGCTTGGTCGC
GTTAGGCATGTTGGTCGCCATTGGTATTCAATGGGGTATTGGAAAGTTTTTTGAGTACCAACAAGATCAGCAGCAGGAGC
GGCTTGATTACCTTACTCACTACATTGCTGAGCTCGACCAGCGTATTGAAGCAATGAAAATCGCCGAGCAAGAGCACAGC
AAAATCCTCGAACGTTTAAAAGTGGTTGAAGGGTTACAAAACGGTAGAAACAAAACGACCGAGTTTATGAACTTGATGCC
AGCCGTCATTCCTGAAGGTGTATATGTCGACAAGATCAAAATGAATGATCTGGAAATTGAGATCTCGGGGATCTCTGATA
GCACTCCAAAACTTGCCACGATGCTGGACAACATGGAGCGTTCGGCCAAGTTGAATGATGTAGAAATGCACTCCATCGTT
CACGGAAAAGCGCGTTTTGGAAAAGAGTTCCAAACGTTCAAAGTGTCTTTCATGTTCAAAGTGCCGGAGAAGAAAGTGGA
GGCCCAGCATGGTTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilN | Vibrio campbellii strain DS40M4 |
83.246 |
100 |
0.832 |
| pilN | Vibrio cholerae strain A1552 |
60.106 |
98.429 |
0.592 |