Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   AL468_RS13290 Genome accession   NZ_CP014134
Coordinates   889297..891555 (-) Length   752 a.a.
NCBI ID   WP_104974310.1    Uniprot ID   -
Organism   Vibrio diabolicus strain FDAARGOS_99     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 884297..896555
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL468_RS13270 (AL468_04685) kdsB 885589..886344 (-) 756 WP_104974308.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  AL468_RS13275 (AL468_04690) - 886344..886523 (-) 180 WP_005390649.1 Trm112 family protein -
  AL468_RS13280 (AL468_04695) lpxK 886504..887511 (-) 1008 WP_104974309.1 tetraacyldisaccharide 4'-kinase -
  AL468_RS13285 (AL468_04700) msbA 887517..889265 (-) 1749 WP_006742148.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  AL468_RS13290 (AL468_04705) comEC 889297..891555 (-) 2259 WP_104974310.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  AL468_RS13295 (AL468_04710) - 891564..892073 (+) 510 WP_005390643.1 DUF2062 domain-containing protein -
  AL468_RS13300 (AL468_04715) lolE 892222..893466 (-) 1245 WP_104974311.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  AL468_RS13305 (AL468_04720) lolD 893469..894176 (-) 708 WP_053807148.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  AL468_RS13310 (AL468_04725) lolC 894169..895377 (-) 1209 WP_168187818.1 lipoprotein-releasing ABC transporter permease subunit LolC -
  AL468_RS13315 (AL468_04730) - 895627..896196 (+) 570 WP_025766933.1 hypothetical protein -

Sequence

Protein


Download         Length: 752 a.a.        Molecular weight: 84276.09 Da        Isoelectric Point: 8.3601

>NTDB_id=168559 AL468_RS13290 WP_104974310.1 889297..891555(-) (comEC) [Vibrio diabolicus strain FDAARGOS_99]
MTLSEKSWTLALFVASVISSAWWPTIPDWRWLLLGIITTGSIIKLRRGLISIGAIAGFMVVIVHGNVLESQRQALFQAGE
NITIIGKVDSPFTQISHGYEGIVALKKVNSQTLLPFLKPKIRLITPFPLDVNSEFTTSVSLKPITGLRNEAGFDAEKHAM
GKSIIARGVVNKDVTWIIRSTTSLRQAIIADVSEDVSSLHHFSLINALVFADRSWLSKEDWQALRDSGLLHLVSISGLHI
GMAFTFGLVVGGAIRYALPQYQLLPSLCGLMFAVAYAWLADFSLPTTRAVSVCVIYVVLKYTLVHWASWRVLLLAVALQL
LVQPFASYSMSFWLSYLSVCAVLFAINLIRHQNGGWKAKLKVLLLTQLMLSVLIVPISGYYFSGFSLSSIAYNLAFIPWF
GFIVVPLTFLALFSSLFLEMIAKSLWQLVDWSLQPLSTSIQYAIGSWQPISIEMTGLILAGIACLVFQRFIFQYAWCLLL
GIVISIKLTSEYGQQHWRIDVLDVGHGLAVIVEKDDKVLLYDTGKAWQNGSIAEQVVTPVLHQRGYESIDTMILSHSDND
HAGGRLFIEDVFSPQRKLSSQNFIGYESCTRGDHWKWQGLNIEVLWPPALVQRAYNPHSCVLRLTDPISTFSMLFTGDIE
TISEWILLREPEKLKSDVMLVPHHGSKSSSNPRFIEAVNPSVAVASLAKNNQWGMPAEHVVAAYRKLDTTWLDTGEHGQV
SFSIHRDNWRSETKRSDTFEPWYRQMLRKGVE

Nucleotide


Download         Length: 2259 bp        

>NTDB_id=168559 AL468_RS13290 WP_104974310.1 889297..891555(-) (comEC) [Vibrio diabolicus strain FDAARGOS_99]
ATGACTCTCTCAGAAAAAAGTTGGACCTTGGCGTTATTTGTAGCGAGCGTAATTTCGTCAGCTTGGTGGCCGACAATACC
AGATTGGCGTTGGCTGCTGCTGGGAATAATAACCACTGGCTCAATAATCAAATTACGTCGTGGCTTAATTAGCATAGGCG
CAATTGCGGGCTTTATGGTTGTCATCGTCCACGGCAATGTATTGGAGTCTCAGAGACAAGCCCTTTTTCAAGCAGGGGAG
AATATTACCATAATTGGTAAAGTTGACAGCCCTTTTACGCAAATAAGTCACGGATATGAAGGCATTGTGGCTCTAAAAAA
GGTAAATTCTCAAACTCTGTTACCTTTTCTTAAACCTAAAATCCGTCTTATTACGCCTTTTCCACTCGATGTTAACAGTG
AGTTTACGACATCCGTCTCGTTAAAGCCGATTACAGGCCTACGCAACGAAGCTGGTTTTGACGCCGAAAAGCACGCAATG
GGTAAAAGTATTATCGCACGCGGTGTTGTTAACAAGGATGTTACCTGGATTATTCGTTCTACTACATCTTTGCGCCAAGC
CATTATCGCTGATGTTTCGGAGGATGTGTCCTCCCTTCATCATTTCTCGTTAATAAATGCGTTAGTTTTTGCCGATCGCT
CTTGGTTATCTAAGGAGGATTGGCAAGCACTCAGAGACAGTGGTTTACTGCACTTGGTCTCGATTTCGGGCTTACATATT
GGTATGGCGTTTACTTTTGGGCTAGTGGTGGGCGGTGCCATTCGTTATGCGTTACCTCAATACCAGCTATTGCCTAGCTT
ATGTGGGCTGATGTTTGCCGTTGCCTATGCTTGGTTAGCGGACTTCTCATTACCTACTACCCGCGCGGTGTCGGTATGTG
TTATTTACGTCGTTCTCAAATATACCTTAGTGCACTGGGCTTCCTGGCGGGTACTTTTGCTCGCGGTAGCGCTACAACTG
CTTGTTCAACCTTTTGCATCGTATAGCATGAGTTTTTGGTTATCGTATTTGTCAGTTTGCGCAGTGTTGTTCGCAATCAA
TTTGATTCGGCATCAAAACGGGGGCTGGAAGGCGAAGTTAAAAGTGCTATTGCTTACTCAATTGATGTTGAGTGTGTTAA
TCGTGCCTATTAGTGGCTATTACTTTTCTGGTTTCAGTTTGTCATCAATTGCATACAACTTGGCGTTTATTCCTTGGTTC
GGATTTATCGTTGTGCCTTTGACGTTTCTGGCCCTGTTCTCATCTTTATTTCTTGAAATGATAGCAAAGTCTCTGTGGCA
GTTGGTGGACTGGTCATTGCAGCCATTGAGCACGTCAATACAGTACGCGATAGGCTCCTGGCAACCCATTAGTATAGAAA
TGACAGGGTTGATTCTGGCGGGAATTGCTTGCTTGGTGTTTCAACGATTCATATTTCAGTACGCGTGGTGTTTGTTACTT
GGCATTGTAATTAGTATTAAGCTCACATCGGAATATGGTCAGCAACATTGGCGCATTGATGTATTAGATGTGGGCCATGG
CCTTGCGGTGATTGTAGAAAAAGACGATAAAGTGTTGCTCTATGATACAGGTAAAGCATGGCAAAATGGCAGTATTGCGG
AGCAGGTCGTCACTCCGGTCTTGCATCAACGAGGTTATGAAAGCATCGATACGATGATCCTCAGCCATTCCGACAATGAC
CATGCAGGAGGGCGCTTGTTCATTGAAGATGTCTTTTCGCCACAGCGCAAACTCAGTAGCCAAAACTTTATCGGATATGA
GTCTTGTACTCGCGGCGATCATTGGAAATGGCAAGGGTTAAATATAGAAGTACTTTGGCCTCCTGCTCTTGTTCAACGTG
CATATAATCCGCACTCCTGTGTACTACGTCTTACCGACCCTATTTCTACGTTTAGTATGCTTTTTACTGGTGATATTGAG
ACCATTAGCGAGTGGATCTTGCTCAGGGAGCCTGAAAAGTTAAAAAGTGATGTGATGTTGGTCCCTCATCATGGTAGTAA
AAGTTCGTCGAATCCTCGTTTTATTGAAGCGGTAAACCCGAGTGTGGCCGTTGCTTCTTTAGCAAAAAATAATCAATGGG
GAATGCCGGCAGAACATGTTGTTGCAGCATATCGCAAGCTTGACACTACTTGGCTTGATACTGGGGAACATGGTCAGGTA
AGCTTCTCTATTCACCGTGATAATTGGCGCTCAGAAACCAAACGTAGCGATACATTTGAGCCTTGGTATAGGCAGATGCT
GCGTAAGGGAGTAGAATGA

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(504-686)

Competence protein (Competence)

(208-466)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio parahaemolyticus RIMD 2210633

70.612

100

0.706
  comEC Vibrio campbellii strain DS40M4

65.824

100

0.658
  comEC Vibrio cholerae strain A1552

42.119

100

0.423

Multiple sequence alignment