Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   AL552_RS05140 Genome accession   NZ_CP014094
Coordinates   895261..897519 (+) Length   752 a.a.
NCBI ID   WP_104969224.1    Uniprot ID   -
Organism   Vibrio diabolicus strain FDAARGOS_96     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 890261..902519
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL552_RS05115 (AL552_13275) - 890621..891190 (-) 570 WP_025766933.1 hypothetical protein -
  AL552_RS05120 (AL552_13280) lolC 891439..892647 (+) 1209 WP_167426758.1 lipoprotein-releasing ABC transporter permease subunit LolC -
  AL552_RS05125 (AL552_13285) lolD 892640..893347 (+) 708 WP_104969223.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  AL552_RS05130 (AL552_13290) lolE 893350..894594 (+) 1245 WP_048626175.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  AL552_RS05135 (AL552_13295) - 894743..895252 (-) 510 WP_005390643.1 DUF2062 domain-containing protein -
  AL552_RS05140 (AL552_13300) comEC 895261..897519 (+) 2259 WP_104969224.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  AL552_RS05145 (AL552_13305) msbA 897551..899299 (+) 1749 WP_005390646.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  AL552_RS05150 (AL552_13310) lpxK 899305..900312 (+) 1008 WP_006742147.1 tetraacyldisaccharide 4'-kinase -
  AL552_RS05155 (AL552_13315) - 900293..900472 (+) 180 WP_005390649.1 Trm112 family protein -
  AL552_RS05160 (AL552_13320) kdsB 900472..901227 (+) 756 WP_104969225.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 752 a.a.        Molecular weight: 84450.41 Da        Isoelectric Point: 8.3542

>NTDB_id=168317 AL552_RS05140 WP_104969224.1 895261..897519(+) (comEC) [Vibrio diabolicus strain FDAARGOS_96]
MTLSEKSWTLALFVASVISSAWWPTIPDWRWLLLGIITTGSIIKLRRGLISIGAIAGFMVVIVHGNVLESQRQALFQAGE
NITIIGKVDSPFTQISHGYEGIVALKKVNSQTLLPFLKPKIRLITPFPLDVNSEFTTSVSLKPITGLRNEAGFDAEKHAM
GKSIIARGVVNKDVTWIIRSTTSLRQAIIADVSEDVSSLHHFSLINALVFADRSWLSKEDWQGLRDSGLLHLVSISGLHI
GMAFTFGLVVGGAIRYTLPQYQLLPSLCGLMFAVAYAWLADFSLPTTRAVSVCVIYVVLKYTLVHWASWRVLLLAVALQL
LVQPFASYSMSFWLSYLSVCAVLFAINLIRHQNGGWKAKLKVLLLTQLMLSVLIVPISGYYFSGFSLSSIAYNLAFIPWF
GFIVVPLMFLALFSSLFLEMIAKSLWQLVDWSLQPLSTSIQYAIGSWQPISIEMTGLILAGIVCLVFQRFMFQYAWCLLL
GIVISIKLTSEYDQQHWRIDVLDVGHGLAVIVEKDDKVLLYDTGKAWQNGSIAEQVVTPVLHQRGYESIDTMILSHSDND
HAGGRLFIEDAFSPQRKLSSQNFIGYESCTRGDHWKWQGLNIEVLWPPALVQRAYNPHSCVLRLTDPISTFSMLFTGDIE
TISEWILLREPEKLKSDVMLVPHHGSKSSSNPRFIEAVKPSVAVASLAKNNQWGMPAEHVVAAYRKLDITWLDTGEYGQV
SFSIHRDNWRSETKRSDTFEPWYRQMLRKGVE

Nucleotide


Download         Length: 2259 bp        

>NTDB_id=168317 AL552_RS05140 WP_104969224.1 895261..897519(+) (comEC) [Vibrio diabolicus strain FDAARGOS_96]
ATGACTCTCTCAGAAAAAAGTTGGACCTTGGCGTTATTTGTAGCGAGCGTAATTTCGTCAGCTTGGTGGCCGACAATACC
AGATTGGCGTTGGCTGCTGCTGGGAATAATAACCACTGGCTCAATAATCAAATTACGTCGTGGCTTAATTAGCATAGGCG
CAATTGCGGGCTTTATGGTTGTCATCGTCCACGGCAATGTATTGGAGTCTCAGAGACAAGCCCTTTTTCAAGCAGGGGAG
AATATTACCATAATTGGTAAAGTTGACAGCCCTTTTACGCAAATAAGTCACGGATATGAAGGCATTGTGGCTCTAAAAAA
GGTAAATTCTCAAACTCTGTTACCTTTTCTTAAACCTAAAATCCGTCTTATTACGCCTTTTCCACTCGATGTTAACAGTG
AGTTTACGACATCCGTCTCGTTAAAGCCGATTACAGGCCTACGCAACGAAGCTGGTTTTGACGCCGAAAAGCACGCAATG
GGTAAAAGCATTATCGCACGCGGTGTTGTTAACAAGGATGTTACCTGGATTATTCGCTCTACCACATCTTTGCGCCAAGC
CATTATCGCTGATGTTTCGGAGGATGTGTCCTCCCTTCATCATTTCTCGTTAATAAATGCGTTAGTTTTTGCCGATCGCT
CTTGGTTATCTAAGGAGGATTGGCAAGGACTCAGAGACAGTGGTTTACTGCACTTGGTCTCGATTTCGGGCTTACATATT
GGTATGGCGTTCACTTTTGGGCTAGTGGTGGGCGGTGCCATTCGTTATACGTTACCTCAATACCAGCTATTGCCTAGCTT
ATGTGGGCTGATGTTTGCCGTTGCCTATGCTTGGTTAGCGGACTTCTCATTACCTACTACCCGCGCGGTGTCGGTATGTG
TTATTTACGTCGTTCTCAAGTATACCTTAGTGCACTGGGCTTCCTGGCGAGTACTTTTGCTCGCGGTAGCGCTACAACTG
CTTGTTCAACCTTTTGCATCGTATAGCATGAGTTTTTGGTTATCGTATTTGTCAGTTTGCGCAGTGTTGTTCGCAATCAA
TTTGATTCGGCATCAAAACGGGGGCTGGAAGGCGAAGTTAAAAGTGCTATTGCTTACTCAATTGATGTTGAGTGTGTTAA
TCGTGCCTATTAGTGGCTATTACTTTTCTGGTTTCAGTTTGTCATCAATTGCATACAACTTGGCGTTTATTCCTTGGTTC
GGATTTATCGTTGTGCCTTTGATGTTTCTGGCCCTGTTCTCATCTTTATTTCTTGAAATGATAGCAAAGTCTCTGTGGCA
GTTGGTGGACTGGTCATTGCAGCCATTGAGCACGTCAATTCAGTACGCGATAGGCTCCTGGCAACCCATTAGTATAGAAA
TGACAGGGTTGATTCTGGCGGGAATTGTTTGCTTGGTGTTTCAACGATTCATGTTTCAGTACGCGTGGTGTTTGTTACTT
GGCATTGTAATTAGTATTAAGCTCACATCGGAATATGATCAGCAACATTGGCGCATTGATGTACTAGATGTGGGCCATGG
CCTTGCGGTGATTGTAGAAAAAGACGATAAAGTGTTGCTCTATGATACAGGTAAAGCATGGCAAAATGGCAGTATTGCGG
AGCAGGTCGTCACTCCGGTCTTGCATCAACGAGGTTATGAAAGCATCGATACGATGATCCTCAGCCACTCCGACAATGAC
CATGCAGGAGGACGCTTGTTCATTGAAGATGCCTTTTCGCCACAGCGCAAACTCAGTAGCCAAAACTTTATCGGATATGA
GTCTTGTACTCGCGGCGATCATTGGAAATGGCAAGGGTTAAATATAGAAGTACTTTGGCCTCCTGCTCTTGTTCAACGTG
CATATAATCCGCACTCTTGTGTACTACGCCTTACCGACCCTATTTCTACGTTCAGTATGCTTTTTACTGGTGATATTGAG
ACCATTAGCGAGTGGATCTTGCTCAGGGAGCCTGAAAAGTTAAAAAGTGATGTGATGTTGGTCCCTCATCATGGTAGTAA
AAGTTCGTCGAATCCTCGCTTTATTGAGGCGGTAAAACCGAGTGTGGCCGTTGCTTCTTTGGCAAAAAATAATCAATGGG
GAATGCCGGCAGAACATGTTGTTGCAGCATATCGCAAGCTTGACATTACTTGGCTTGATACTGGGGAATATGGTCAGGTA
AGCTTCTCTATTCACCGTGATAATTGGCGCTCAGAAACCAAACGTAGCGATACATTTGAGCCTTGGTATAGGCAGATGCT
GCGTAAGGGAGTAGAATGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(208-466)

Metallo-beta-lactamase superfamily (Lactamase_B)

(504-686)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio parahaemolyticus RIMD 2210633

70.612

100

0.706
  comEC Vibrio campbellii strain DS40M4

65.824

100

0.658
  comEC Vibrio cholerae strain A1552

41.854

100

0.42

Multiple sequence alignment