Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   BHE76_RS04925 Genome accession   NZ_CP017353
Coordinates   1010119..1010613 (-) Length   164 a.a.
NCBI ID   WP_003292123.1    Uniprot ID   A0ABY1WHY7
Organism   Pseudomonas aeruginosa strain FA-HZ1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1005119..1015613
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BHE76_RS04900 (BHE76_04900) - 1005258..1006781 (-) 1524 WP_058132846.1 conjugal transfer protein TraG N-terminal domain-containing protein -
  BHE76_RS04905 (BHE76_04905) - 1006797..1007150 (-) 354 WP_023115032.1 hypothetical protein -
  BHE76_RS04910 (BHE76_04910) - 1007147..1008553 (-) 1407 WP_023115031.1 integrating conjugative element protein -
  BHE76_RS04915 (BHE76_04915) - 1008564..1009508 (-) 945 WP_023115030.1 TIGR03756 family integrating conjugative element protein -
  BHE76_RS04920 (BHE76_04920) - 1009505..1009954 (-) 450 WP_023115029.1 TIGR03757 family integrating conjugative element protein -
  BHE76_RS04925 (BHE76_04925) radC 1010119..1010613 (-) 495 WP_003292123.1 RadC family protein Machinery gene
  BHE76_RS04930 (BHE76_04930) - 1010809..1011551 (-) 743 Protein_1002 thioredoxin domain-containing protein -
  BHE76_RS04935 (BHE76_04935) - 1011565..1014453 (-) 2889 WP_023115028.1 conjugative transfer ATPase -
  BHE76_RS04940 (BHE76_04940) - 1014453..1014887 (-) 435 WP_023093111.1 TIGR03751 family conjugal transfer lipoprotein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 17848.54 Da        Isoelectric Point: 6.6460

>NTDB_id=168317 BHE76_RS04925 WP_003292123.1 1010119..1010613(-) (radC) [Pseudomonas aeruginosa strain FA-HZ1]
MSLVIADSRPESLTLIAAQHEDWIIRQAITLLENRVFKAGPALGSPAAVRDYLRLKLVAEPNEIFAVVFLDNQHQVLAFE
PLFKGTVDQTSVYPRVVVQRALALNASALILAHQHPSGNTEPSAADRAITERLKSALATVDVRVLDHFIVGKGSPYSFAE
AGLL

Nucleotide


Download         Length: 495 bp        

>NTDB_id=168317 BHE76_RS04925 WP_003292123.1 1010119..1010613(-) (radC) [Pseudomonas aeruginosa strain FA-HZ1]
ATGTCTCTTGTCATCGCCGACTCCCGCCCGGAGTCGCTCACCCTGATCGCCGCCCAGCACGAAGACTGGATCATCCGGCA
GGCCATCACCCTGCTGGAGAACCGCGTGTTCAAGGCCGGTCCAGCGCTGGGCAGTCCCGCCGCCGTGCGCGACTACCTGC
GCCTGAAACTGGTCGCGGAGCCGAACGAAATCTTCGCCGTCGTGTTTCTCGACAACCAGCACCAGGTGCTCGCCTTTGAG
CCGCTGTTCAAGGGCACGGTCGACCAGACTTCGGTGTATCCGAGGGTGGTGGTCCAGCGTGCGCTGGCGCTCAACGCTTC
GGCGCTGATCCTGGCGCATCAGCACCCCTCGGGGAACACCGAGCCCTCGGCCGCCGATCGTGCGATCACCGAGCGGCTGA
AGAGCGCCCTGGCGACCGTCGATGTCCGGGTGCTGGATCACTTCATCGTCGGCAAGGGCAGCCCGTACTCGTTCGCCGAA
GCCGGCTTGTTGTAG

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(44-162)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

47.26

89.024

0.421

Multiple sequence alignment