Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   AL494_RS12260 Genome accession   NZ_CP014057
Coordinates   2480260..2480772 (-) Length   170 a.a.
NCBI ID   WP_002484307.1    Uniprot ID   -
Organism   Staphylococcus saprophyticus strain FDAARGOS_137     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2475260..2485772
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL494_RS12215 (AL494_12100) - 2475557..2476171 (-) 615 WP_048787279.1 FMN-binding negative transcriptional regulator -
  AL494_RS12220 (AL494_12105) - 2476213..2476611 (-) 399 WP_172439367.1 nuclear transport factor 2 family protein -
  AL494_RS12225 (AL494_12110) - 2476653..2476997 (-) 345 WP_047505227.1 DUF4260 domain-containing protein -
  AL494_RS12235 (AL494_12115) - 2477591..2477905 (+) 315 WP_225791762.1 DUF1093 domain-containing protein -
  AL494_RS12240 (AL494_12120) - 2478147..2478419 (-) 273 WP_048787278.1 hypothetical protein -
  AL494_RS12245 (AL494_12125) - 2479239..2479445 (+) 207 WP_047505223.1 hypothetical protein -
  AL494_RS12250 (AL494_12130) - 2479470..2479709 (+) 240 WP_047505220.1 hypothetical protein -
  AL494_RS12830 - 2479706..2479846 (+) 141 WP_162835602.1 hypothetical protein -
  AL494_RS12255 (AL494_12135) rpsR 2479968..2480210 (-) 243 WP_002484306.1 30S ribosomal protein S18 -
  AL494_RS12260 (AL494_12140) ssbA 2480260..2480772 (-) 513 WP_002484307.1 single-stranded DNA-binding protein Machinery gene
  AL494_RS12265 (AL494_12145) rpsF 2480791..2481096 (-) 306 WP_002484308.1 30S ribosomal protein S6 -
  AL494_RS12270 (AL494_12150) - 2481518..2482324 (+) 807 WP_047505216.1 GH25 family lysozyme -
  AL494_RS12275 (AL494_12155) ychF 2482487..2483584 (-) 1098 WP_047505213.1 redox-regulated ATPase YchF -
  AL494_RS12280 (AL494_12160) - 2483584..2483799 (-) 216 WP_002484311.1 DUF951 domain-containing protein -
  AL494_RS12285 (AL494_12165) - 2483828..2484706 (-) 879 WP_048787277.1 mechanosensitive ion channel family protein -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18948.48 Da        Isoelectric Point: 4.9163

>NTDB_id=168179 AL494_RS12260 WP_002484307.1 2480260..2480772(-) (ssbA) [Staphylococcus saprophyticus strain FDAARGOS_137]
MINRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRKQAENVNNYLFKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVCDSVQFLEPKNQNQRHGQEGNNNNFQNFGGQQSGQNTSSYQSNNNNNSSNNNQSDNPFANANGP
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=168179 AL494_RS12260 WP_002484307.1 2480260..2480772(-) (ssbA) [Staphylococcus saprophyticus strain FDAARGOS_137]
ATGATAAATAGAGTTGTTTTAGTCGGTCGTTTAACTAAAGATCCAGAATATAGAACAACACCCTCAGGCGTGAGTGTTGC
GACTTTTACTCTAGCAGTAAATCGTACGTTTACAAATGCGCAAGGGGAACGCGAAGCGGATTTCATTAACTGTGTCGTTT
TTAGAAAACAAGCAGAGAATGTTAACAACTACTTATTTAAAGGTAGTTTAGCTGGCGTTGACGGTCGCATTCAATCACGT
AGCTATGAAAACCAAGAAGGTCGTCGTATATTTGTGACTGAAGTAGTTTGTGATAGTGTTCAATTCCTTGAACCTAAAAA
TCAAAACCAACGTCATGGTCAAGAAGGAAATAACAATAATTTCCAAAACTTTGGCGGACAACAATCAGGACAAAATACGT
CATCTTATCAAAGTAATAACAACAATAATTCATCAAACAATAATCAATCTGATAACCCATTTGCAAATGCAAACGGACCA
ATTGATATTAGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

63.953

100

0.647
  ssb Latilactobacillus sakei subsp. sakei 23K

57.225

100

0.582
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.091

64.706

0.382

Multiple sequence alignment