Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   AL494_RS08180 Genome accession   NZ_CP014057
Coordinates   1652257..1653132 (-) Length   291 a.a.
NCBI ID   WP_011303269.1    Uniprot ID   Q49X34
Organism   Staphylococcus saprophyticus strain FDAARGOS_137     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1647257..1658132
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL494_RS08165 (AL494_08085) xerC 1647516..1648406 (-) 891 WP_011303266.1 tyrosine recombinase XerC -
  AL494_RS08170 (AL494_08090) trmFO 1648525..1649832 (-) 1308 WP_047503612.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  AL494_RS08175 (AL494_08095) topA 1649987..1652053 (-) 2067 WP_011303268.1 type I DNA topoisomerase -
  AL494_RS08180 (AL494_08100) dprA 1652257..1653132 (-) 876 WP_011303269.1 DNA-processing protein DprA Machinery gene
  AL494_RS08185 (AL494_08105) sucD 1653439..1654344 (-) 906 WP_011303270.1 succinate--CoA ligase subunit alpha -
  AL494_RS08190 (AL494_08110) sucC 1654366..1655532 (-) 1167 WP_011303271.1 ADP-forming succinate--CoA ligase subunit beta -
  AL494_RS08195 (AL494_08115) - 1655640..1656410 (-) 771 WP_047503601.1 ribonuclease HII -
  AL494_RS08200 (AL494_08120) ylqF 1656417..1657277 (-) 861 WP_047503598.1 ribosome biogenesis GTPase YlqF -

Sequence

Protein


Download         Length: 291 a.a.        Molecular weight: 33710.41 Da        Isoelectric Point: 10.3610

>NTDB_id=168170 AL494_RS08180 WP_011303269.1 1652257..1653132(-) (dprA) [Staphylococcus saprophyticus strain FDAARGOS_137]
MNDLDLLKLRFAGLSTQQIHRLLRFSPSFMKYSKVDKQYILKQFLGTVKITAKNENVYRLYVTTNLEVLFKQLKAWKVHF
ITINHRLYPQLLREIYDPPLILFYRGKLTLMQSPRTLAIIGSRQATQYTWQSLQTFFPSFKKHHLTIISGLAKGADMMAH
QHALLFKLPTIAVLGFGHMHHYPKETKEIRQQIEKDGIVISEYLPLEKPKRYHFPERNRLISGLSKGIFITESAENSGTS
ITTRFALEQNRDVYVLPGTIFNKMTLGNLRSAQEGAKIVLNADDILEDFII

Nucleotide


Download         Length: 876 bp        

>NTDB_id=168170 AL494_RS08180 WP_011303269.1 1652257..1653132(-) (dprA) [Staphylococcus saprophyticus strain FDAARGOS_137]
ATGAACGATTTAGACCTTTTAAAGCTTCGATTTGCTGGACTATCTACACAACAAATACATCGATTATTAAGATTTTCTCC
CTCTTTTATGAAATATAGTAAGGTAGATAAACAATACATACTCAAACAATTTTTGGGAACAGTAAAAATAACTGCAAAAA
ATGAAAATGTATACCGATTATATGTGACAACTAATTTAGAAGTACTATTCAAACAATTAAAAGCATGGAAAGTTCATTTC
ATAACAATTAATCACCGTTTATATCCACAGTTATTGCGAGAAATTTATGATCCACCCCTAATCCTATTTTATCGCGGTAA
GCTCACTTTAATGCAATCTCCTCGTACCCTAGCTATTATTGGATCTAGACAAGCGACACAATATACATGGCAATCACTTC
AAACATTTTTTCCTTCATTTAAAAAACATCATTTGACGATAATATCAGGGCTTGCAAAAGGTGCAGATATGATGGCGCAT
CAACATGCTTTGTTATTTAAGTTACCTACAATTGCGGTATTAGGATTTGGACATATGCATCATTATCCGAAAGAAACTAA
AGAGATAAGACAGCAAATTGAAAAAGATGGAATAGTTATAAGTGAATATCTCCCTCTCGAAAAGCCCAAAAGATACCATT
TCCCAGAAAGGAATAGATTGATTAGTGGACTTTCTAAAGGTATCTTTATCACAGAATCTGCAGAAAATAGTGGTACAAGT
ATCACGACGCGATTTGCATTAGAACAAAATAGAGATGTGTATGTCTTACCTGGTACAATATTTAATAAAATGACATTAGG
CAATTTGCGTAGTGCTCAAGAAGGGGCGAAAATTGTATTGAATGCGGATGATATATTAGAAGATTTTATTATATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(74-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q49X34

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

50.338

100

0.512
  dprA Staphylococcus aureus N315

50.338

100

0.512
  dprA Lactococcus lactis subsp. cremoris KW2

38.966

99.656

0.388
  dprA Vibrio campbellii strain DS40M4

36.949

100

0.375

Multiple sequence alignment