Detailed information NTG0167989

Bioinformatically predicted

Overview

• Name: comEC
• Type: Machinery gene
• Locus tag: AL464_RS15775
• Genome accession: NZ_CP014046
• Coordinates: 3085176..3087434 (-)
• Length: 752 a.a.
• NCBI ID: WP_029804268.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain ATCC 17802
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Prophage	3065524..3090111	3085176..3087434	within	0

Gene organization within MGE regions

Location: 3065524..3090111

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AL464_RS15690 (AL464_14235)	-	3065524..3066294 (-)	771	WP_005456207.1	ABC transporter ATP-binding protein	-
AL464_RS15700 (AL464_14240)	-	3066529..3067989 (-)	1461	WP_005481901.1	flagellar sheath protein A	-
AL464_RS15705 (AL464_14245)	-	3068446..3069993 (+)	1548	WP_005456280.1	DUF3360 family protein	-
AL464_RS15710 (AL464_14250)	pflB	3070300..3072576 (+)	2277	WP_005456189.1	formate C-acetyltransferase	-
AL464_RS15715 (AL464_14255)	-	3072729..3073706 (+)	978	WP_005481800.1	lipid A deacylase LpxR family protein	-
AL464_RS15720 (AL464_14260)	pflA	3073853..3074593 (+)	741	WP_005456250.1	pyruvate formate lyase 1-activating protein	-
AL464_RS15725 (AL464_14265)	-	3074754..3075422 (+)	669	WP_005495910.1	energy-coupling factor ABC transporter permease	-
AL464_RS15730 (AL464_14270)	-	3075577..3076077 (+)	501	WP_005456271.1	YfbU family protein	-
AL464_RS15740 (AL464_14275)	-	3076566..3078500 (+)	1935	WP_005456210.1	PrkA family serine protein kinase	-
AL464_RS15745 (AL464_14280)	-	3078548..3079819 (+)	1272	WP_005481863.1	YeaH/YhbH family protein	-
AL464_RS15750 (AL464_14285)	-	3079831..3081390 (+)	1560	WP_029804267.1	SpoVR family protein	-
AL464_RS15755 (AL464_14290)	kdsB	3081468..3082223 (-)	756	WP_005456221.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
AL464_RS15760 (AL464_14295)	-	3082223..3082402 (-)	180	WP_005378451.1	Trm112 family protein	-
AL464_RS15765 (AL464_14300)	lpxK	3082383..3083390 (-)	1008	WP_021822159.1	tetraacyldisaccharide 4'-kinase	-
AL464_RS15770 (AL464_14305)	msbA	3083396..3085144 (-)	1749	WP_015296464.1	lipid A ABC transporter ATP-binding protein/permease MsbA	-
AL464_RS15775 (AL464_14310)	comEC	3085176..3087434 (-)	2259	WP_029804268.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
AL464_RS15780 (AL464_14315)	-	3087443..3087952 (+)	510	WP_005456245.1	DUF2062 domain-containing protein	-
AL464_RS15785 (AL464_14320)	lolE	3088157..3089401 (-)	1245	WP_015296461.1	lipoprotein-releasing ABC transporter permease subunit LolE	-
AL464_RS15790 (AL464_14325)	lolD	3089404..3090111 (-)	708	WP_023585383.1	lipoprotein-releasing ABC transporter ATP-binding protein LolD	-

Sequence

Protein

• Length: 752 a.a.
• Molecular weight: 84795.41 Da
• Isoelectric Point: 9.6367

>NTDB_id=167989 AL464_RS15775 WP_029804268.1 3085176..3087434(-) (comEC) [Vibrio parahaemolyticus strain ATCC 17802]
MTLLEKSWTLALFVASVISSAWWPTMPDWRWLLLGIITTGSIIKLRRGLISIGVIVGFMVVIVHGNIMEYQRQALFQAGE
NSTIIGRVDSSFTQISHGYEGVVAIKQVNTHTLLPFLKPKVRLITPFPLAVNSEFTTNVLIKPIIGLRNEAGFDAEKQSM
GNGVVARAVVTKDSYWVIRTSSSWREAIIQTVERDISRLEHFALIKALVFADRTGLTKEDWQSLRDSGLLHLVSISGLHI
GMALTFGLALGGLIRLAMPRYWFLPSVSGLAFAIVYAWLADFSLPTTRAVSVCIIYLALKYWLVHWSPWRVLLLAVALQL
FFQPFASFSLSFWLSYLSVGAVLFAVNTVQDSKEGRLGKLRILLLTQLILSLLIVPISGYFFSGFSWSSLVYNLVFIPWF
GFVVVPIMFAALIASLLFPMLATVLWYLLDVFLVPLSWSVRYAIGTWQPISAEWTFVIAVVSVVLVLRHVMPRYVWMFVC
VIVVMTGLFPKQYNQTWRIDVLDVGHGLAVLVEKEGRVLLYDTGKAWQNGSIAEQVITPVLHRRGYSSVDTMILSHADND
HAGGRKVIEQYFSPKNKLSSQSFLHYQPCIAAEKWKWQGLNIEVLWPPKPVVRAYNPHSCVISLEDPSTGFKMLFTGDIE
AISEWILLREPEKLRSDVMLVPHHGSKTSSNPKFIKVVEPSLAIASTAKLNQWGMPAPEVVQAYTDSGVSWLDTGSDGQI
TILLDGNNWRFESKRRETIEPWYRQMLRNRVE

Nucleotide

• Length: 2259 bp

>NTDB_id=167989 AL464_RS15775 WP_029804268.1 3085176..3087434(-) (comEC) [Vibrio parahaemolyticus strain ATCC 17802]
ATGACTCTCTTAGAAAAAAGTTGGACCTTGGCGTTATTTGTCGCGAGCGTAATTTCGTCTGCATGGTGGCCGACGATGCC
GGATTGGCGTTGGTTGCTGCTGGGAATAATTACCACTGGCTCAATAATTAAATTACGTCGAGGCTTAATTAGCATAGGCG
TAATTGTGGGCTTTATGGTTGTCATCGTCCACGGCAATATTATGGAGTATCAGAGACAAGCCCTTTTTCAAGCAGGTGAG
AATAGTACCATAATTGGTAGAGTTGACAGCTCTTTTACGCAAATAAGTCACGGATATGAAGGTGTCGTAGCGATAAAACA
AGTGAATACTCACACTCTGTTACCTTTTCTTAAACCTAAAGTCCGCCTTATAACGCCATTCCCACTAGCTGTTAACAGTG
AGTTTACGACTAACGTTTTGATTAAGCCCATTATCGGCCTCAGAAATGAAGCGGGTTTCGACGCAGAAAAGCAGTCAATG
GGAAATGGTGTTGTTGCAAGAGCGGTCGTAACTAAAGATTCATACTGGGTCATTCGTACTTCTTCGTCTTGGCGCGAAGC
TATTATTCAAACTGTTGAGCGTGATATTTCTCGCCTTGAGCATTTTGCTCTAATTAAAGCACTGGTTTTTGCTGATCGCA
CTGGGCTTACCAAAGAGGATTGGCAGTCTCTGCGTGACAGCGGATTACTGCATCTTGTATCAATTTCTGGTCTACACATT
GGGATGGCATTGACGTTTGGGCTCGCCCTTGGTGGGCTTATTCGGCTTGCTATGCCGCGATATTGGTTTCTGCCATCAGT
GAGTGGGTTGGCGTTTGCCATTGTTTACGCTTGGCTTGCTGATTTTTCTTTGCCGACGACCCGAGCCGTTTCTGTTTGTA
TCATCTATCTTGCTTTGAAGTATTGGCTTGTTCATTGGAGTCCATGGCGCGTACTGTTATTGGCTGTGGCGTTGCAACTT
TTCTTCCAACCTTTTGCTTCTTTTAGTTTGAGTTTTTGGCTGTCTTATTTATCCGTTGGTGCCGTTTTGTTTGCGGTTAA
CACAGTGCAAGACTCGAAGGAAGGTCGTTTGGGAAAGTTGCGGATACTTCTGTTGACTCAACTGATACTGAGCTTATTGA
TTGTCCCGATCAGTGGCTATTTTTTCTCTGGATTTAGCTGGTCTTCTTTAGTCTACAATTTGGTTTTCATTCCTTGGTTT
GGCTTTGTTGTCGTTCCAATCATGTTTGCTGCTTTAATCGCGTCATTGCTCTTTCCTATGTTGGCGACGGTTCTATGGTA
TTTGCTTGACGTATTCCTTGTGCCACTAAGTTGGTCGGTTCGATATGCCATAGGAACTTGGCAACCCATTAGTGCCGAGT
GGACATTTGTTATTGCTGTAGTGAGTGTCGTGCTCGTTTTAAGACATGTTATGCCTCGTTACGTTTGGATGTTTGTCTGT
GTAATTGTTGTGATGACCGGGTTGTTTCCTAAGCAATATAACCAAACTTGGCGTATTGATGTACTTGATGTCGGGCATGG
GTTGGCGGTACTGGTTGAAAAAGAAGGGAGAGTTTTACTCTATGATACGGGCAAGGCTTGGCAAAACGGCAGTATAGCTG
AGCAAGTGATTACGCCAGTACTGCACCGCAGAGGCTACTCAAGTGTCGATACGATGATTTTAAGTCATGCCGATAATGAC
CATGCTGGCGGCCGAAAAGTGATAGAACAGTACTTTTCACCTAAAAACAAACTAAGTAGCCAGAGCTTTTTACATTATCA
GCCTTGTATTGCTGCTGAGAAGTGGAAGTGGCAAGGGTTGAACATTGAGGTACTTTGGCCTCCTAAACCTGTTGTACGTG
CATACAACCCCCACTCTTGTGTCATCAGTCTGGAAGACCCTAGTACAGGTTTTAAAATGTTGTTTACTGGTGATATCGAA
GCCATCAGCGAATGGATACTGCTTCGAGAGCCAGAAAAGCTGCGCAGTGATGTAATGCTAGTGCCGCATCATGGAAGCAA
AACCTCTTCTAACCCTAAGTTTATCAAAGTTGTTGAGCCTAGTTTGGCTATTGCTTCAACGGCAAAACTAAACCAGTGGG
GAATGCCCGCACCTGAAGTCGTTCAGGCCTATACCGACAGTGGTGTTAGTTGGTTAGACACTGGAAGTGATGGCCAAATA
ACAATCTTACTTGATGGCAATAACTGGCGTTTTGAAAGTAAACGTCGTGAGACAATTGAGCCTTGGTATAGGCAGATGCT
GCGTAACCGAGTAGAATAA

Domains

Predicted by InterproScan.

• Metallo-beta-lactamase superfamily (Lactamase_B) (504-680)

• Competence protein (Competence) (208-466)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comEC	Vibrio parahaemolyticus RIMD 2210633	98.537	100	0.985
comEC	Vibrio campbellii strain DS40M4	66.622	100	0.666
comEC	Vibrio cholerae strain A1552	41.347	100	0.416