Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG/mmsA   Type   Machinery gene
Locus tag   WH25_RS03010 Genome accession   NZ_CP017295
Coordinates   628713..630728 (+) Length   671 a.a.
NCBI ID   WP_046165057.1    Uniprot ID   -
Organism   Streptococcus gordonii strain IE35     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 623713..635728
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WH25_RS02995 (WH25_02995) - 626036..627067 (+) 1032 WP_046165055.1 3-deoxy-7-phosphoheptulonate synthase -
  WH25_RS03000 (WH25_03000) acpS 627183..627545 (+) 363 WP_045506039.1 holo-ACP synthase -
  WH25_RS03005 (WH25_03005) alr 627535..628641 (+) 1107 WP_046165056.1 alanine racemase -
  WH25_RS03010 (WH25_03010) recG/mmsA 628713..630728 (+) 2016 WP_046165057.1 ATP-dependent DNA helicase RecG Machinery gene
  WH25_RS03015 (WH25_03015) - 631149..633191 (+) 2043 WP_046165058.1 BglG family transcription antiterminator -
  WH25_RS03020 (WH25_03020) - 633184..633465 (+) 282 WP_011999933.1 PTS sugar transporter subunit IIB -
  WH25_RS03025 (WH25_03025) - 633491..634777 (+) 1287 WP_011999934.1 PTS ascorbate transporter subunit IIC -
  WH25_RS03030 (WH25_03030) - 634777..635463 (+) 687 WP_046165059.1 tryptophan synthase subunit alpha -

Sequence

Protein


Download         Length: 671 a.a.        Molecular weight: 75594.28 Da        Isoelectric Point: 5.4737

>NTDB_id=167968 WH25_RS03010 WP_046165057.1 628713..630728(+) (recG/mmsA) [Streptococcus gordonii strain IE35]
MNLHQPLSVLPGVGPKSAEKFAKLGIETLQDLLLYFPFRYEDFQSKQVLDLEDGEKAVISGVVATPANVQYYGFKRNRLR
FSIKQGEVILAVNFFNQPYLADKVEVGANIAIFGKWDKAKASLTGMKLLAQVEDDLQPVYRVAQGISQTSLIKLIKTAFD
QGLDLLIEENLPQVLLERYQLLSRADAVRVMHFPKDLAEYKQALRRVKFEELFYFQMQLQVLKMETKDVSNGLVLDWQEE
QLQEKKSQLPFPLTGAQERALAEILSDLKSPAHMNRLLQGDVGSGKTVVAGLAMYAVHTAGYQSALMVPTEILAEQHFES
LSQLFPELKLALLTGSMKTAERKETLLAIELGQVDMVIGTHALIQDGVQYHHLGLVIVDEQHRFGVAQRRILREKGDNPD
VLMMTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIITRWVKHEQLEVVLDWIKKELVKGAQVYFISPLIEESEALDLKN
AIDLEEELQAYFGGDARVSLLHGKMKSDEKEAIMQDFKNKEVDILVSTTVIEVGVNVPNATIMVIMDADRFGLSQLHQLR
GRVGRGDKQSYAVLIANPKTESGKKRMKIMTETTDGFVLAEEDLKMRGSGEIFGTRQSGIPEFQVADIVEDYPILEEARK
VASQIVQNKEWRRDPNWHLVALHLDKQDYLD

Nucleotide


Download         Length: 2016 bp        

>NTDB_id=167968 WH25_RS03010 WP_046165057.1 628713..630728(+) (recG/mmsA) [Streptococcus gordonii strain IE35]
ATGAATTTACACCAACCCTTATCGGTTCTGCCGGGAGTAGGACCGAAATCAGCAGAAAAGTTTGCAAAGCTTGGCATTGA
GACTTTGCAGGATTTATTACTGTATTTCCCTTTTCGCTATGAAGACTTTCAAAGCAAGCAGGTACTTGATCTAGAGGATG
GAGAAAAGGCCGTCATTTCTGGTGTAGTTGCGACACCAGCAAATGTTCAGTATTACGGGTTTAAGCGCAATCGTCTCCGT
TTTTCAATCAAGCAAGGGGAAGTCATTCTAGCAGTCAATTTCTTTAACCAGCCTTATTTGGCGGATAAGGTTGAAGTGGG
GGCAAATATTGCTATTTTTGGAAAGTGGGATAAGGCTAAAGCTAGCTTGACTGGGATGAAGCTCTTGGCTCAGGTCGAAG
ACGATTTGCAGCCAGTGTATCGGGTGGCTCAGGGGATTAGCCAGACAAGCCTGATTAAATTAATTAAAACAGCTTTTGAC
CAAGGCTTGGATTTACTGATTGAAGAAAATTTACCCCAGGTCTTGTTGGAACGCTACCAATTGCTATCTCGAGCAGACGC
AGTGAGGGTCATGCATTTTCCAAAAGATTTGGCAGAATACAAACAGGCGCTACGTCGCGTAAAATTCGAAGAATTGTTCT
ATTTCCAAATGCAACTTCAGGTGCTTAAAATGGAAACGAAGGATGTCAGCAACGGTTTGGTACTGGATTGGCAGGAAGAG
CAGCTACAAGAGAAAAAAAGTCAGCTACCTTTTCCTCTGACAGGAGCTCAGGAGAGGGCTTTGGCTGAAATTTTGTCTGA
TTTGAAGTCGCCTGCTCACATGAACCGACTCTTACAGGGAGATGTTGGAAGTGGGAAGACAGTAGTGGCTGGTTTGGCCA
TGTATGCTGTGCATACAGCAGGTTATCAATCGGCTTTAATGGTTCCAACAGAAATTTTGGCTGAGCAGCATTTTGAAAGC
CTCAGTCAGCTATTTCCTGAATTAAAACTAGCTTTATTAACTGGAAGTATGAAAACAGCTGAGCGTAAAGAGACTTTGTT
GGCTATAGAACTCGGTCAGGTAGATATGGTAATTGGGACCCATGCTTTGATCCAAGATGGCGTTCAATACCATCATCTAG
GTCTGGTTATCGTAGATGAACAGCATCGCTTTGGGGTTGCTCAACGTAGAATTTTGCGGGAAAAAGGAGACAATCCTGAT
GTTCTCATGATGACTGCTACCCCCATTCCCAGAACTTTGGCCATTACGGCTTTTGGGGATATGGATGTGTCCATTATTGA
TCAAATGCCGGCGGGACGAAAGCCCATTATTACCCGTTGGGTCAAGCATGAGCAACTCGAGGTCGTGCTTGATTGGATAA
AAAAAGAATTAGTAAAGGGTGCTCAGGTTTACTTTATTTCTCCTTTGATTGAGGAATCAGAAGCTCTGGATCTAAAAAAT
GCTATTGACTTAGAAGAAGAACTGCAAGCCTACTTTGGAGGAGATGCCCGAGTCTCTCTCCTTCATGGGAAGATGAAGAG
TGACGAAAAAGAGGCTATTATGCAGGACTTCAAGAATAAAGAGGTAGATATTTTAGTGTCTACAACGGTCATTGAAGTGG
GTGTTAATGTGCCCAATGCAACGATTATGGTTATCATGGATGCTGATCGTTTTGGTCTCAGCCAGCTCCATCAGTTGCGC
GGGCGTGTGGGGCGTGGTGATAAGCAATCCTATGCCGTTCTTATCGCAAATCCAAAAACAGAGTCCGGAAAGAAACGTAT
GAAAATCATGACGGAAACGACAGATGGCTTTGTACTTGCTGAAGAAGATTTAAAAATGCGTGGTTCAGGAGAGATTTTTG
GAACCCGTCAGTCCGGTATTCCTGAATTTCAAGTGGCTGATATCGTAGAGGACTACCCTATCTTGGAAGAAGCGAGAAAG
GTAGCTAGCCAAATTGTGCAGAATAAAGAATGGAGGAGGGATCCTAACTGGCATCTAGTGGCTCTTCATTTGGATAAGCA
AGATTATTTGGATTAA

Domains

Predicted by InterProScan.

RecG wedge domain (RecG_wedge)

(12-157)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(593-662)

DEAD/DEAH box helicase (DEAD)

(256-411)

Helicase conserved C-terminal domain (Helicase_C)

(451-566)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG/mmsA Streptococcus pneumoniae R6

78.838

100

0.788
  recG/mmsA Streptococcus pneumoniae R36A

78.838

100

0.788
  recG Bacillus subtilis subsp. subtilis str. 168

48.82

100

0.493
  recG Neisseria meningitidis strain C311

39.939

97.765

0.39

Multiple sequence alignment