Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | AL545_RS11160 | Genome accession | NZ_CP014045 |
| Coordinates | 598923..599792 (-) | Length | 289 a.a. |
| NCBI ID | WP_017635919.1 | Uniprot ID | A0A2I3C9C8 |
| Organism | Vibrio alginolyticus strain FDAARGOS_114 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 593923..604792
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AL545_RS11125 (AL545_11130) | rpsP | 594712..594960 (+) | 249 | WP_005379962.1 | 30S ribosomal protein S16 | - |
| AL545_RS11130 (AL545_11135) | rimM | 594990..595538 (+) | 549 | WP_005379964.1 | ribosome maturation factor RimM | - |
| AL545_RS11135 (AL545_11140) | trmD | 595566..596327 (+) | 762 | WP_005385420.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| AL545_RS11140 (AL545_11145) | rplS | 596369..596722 (+) | 354 | WP_005379971.1 | 50S ribosomal protein L19 | - |
| AL545_RS11145 (AL545_11150) | yacG | 597187..597381 (-) | 195 | WP_017635922.1 | DNA gyrase inhibitor YacG | - |
| AL545_RS11150 (AL545_11155) | zapD | 597540..598280 (-) | 741 | WP_017820392.1 | cell division protein ZapD | - |
| AL545_RS11155 (AL545_11160) | coaE | 598308..598922 (-) | 615 | WP_017635920.1 | dephospho-CoA kinase | - |
| AL545_RS11160 (AL545_11165) | pilD | 598923..599792 (-) | 870 | WP_017635919.1 | A24 family peptidase | Machinery gene |
| AL545_RS11165 (AL545_11170) | pilC | 599857..601080 (-) | 1224 | WP_017820393.1 | type II secretion system F family protein | Machinery gene |
| AL545_RS11170 (AL545_11175) | pilB | 601104..602789 (-) | 1686 | WP_017820394.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| AL545_RS11175 (AL545_11180) | - | 602802..603239 (-) | 438 | WP_017820395.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | - |
| AL545_RS11180 (AL545_11185) | nadC | 603501..604388 (-) | 888 | WP_017820396.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
Sequence
Protein
Download Length: 289 a.a. Molecular weight: 32563.76 Da Isoelectric Point: 6.8450
>NTDB_id=167927 AL545_RS11160 WP_017635919.1 598923..599792(-) (pilD) [Vibrio alginolyticus strain FDAARGOS_114]
MEVFQYYPWLFVVFATIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIEPPKEVLTLSVPRSSCQKCATPIRIR
DNIPVISWLLLKGKCHNCQATISARYPLIELLTAFCSGFIAYYFGFSYFTVALLFFTFILIAATFIDLDTMLLPDQLTLP
LTWAGIALALVEISPVTLQDSVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGI
VFGIIQLRLQKQGIEKAFPFGPYLAIAGWISLIWGDQILNWYFTSVLGV
MEVFQYYPWLFVVFATIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIEPPKEVLTLSVPRSSCQKCATPIRIR
DNIPVISWLLLKGKCHNCQATISARYPLIELLTAFCSGFIAYYFGFSYFTVALLFFTFILIAATFIDLDTMLLPDQLTLP
LTWAGIALALVEISPVTLQDSVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGI
VFGIIQLRLQKQGIEKAFPFGPYLAIAGWISLIWGDQILNWYFTSVLGV
Nucleotide
Download Length: 870 bp
>NTDB_id=167927 AL545_RS11160 WP_017635919.1 598923..599792(-) (pilD) [Vibrio alginolyticus strain FDAARGOS_114]
ATGGAAGTATTCCAGTACTACCCTTGGCTATTCGTTGTGTTTGCCACCATCTTCGGTCTGATCGTGGGTAGCTTCCTCAA
TGTGGTTATTTATCGACTACCTAAAATCATGGAGCTAGAATGGCGACGCGAATGTGCCGAGTCATTTCCTGAATACAAAA
TAGAACCTCCTAAAGAAGTGCTGACCTTGAGCGTTCCACGCTCCTCCTGCCAGAAATGCGCAACACCGATACGTATTCGC
GACAACATTCCTGTGATTAGCTGGCTGCTTTTAAAAGGCAAATGTCACAACTGTCAGGCAACCATTAGTGCACGCTATCC
ACTGATTGAACTGCTCACCGCGTTCTGTTCTGGCTTTATCGCTTATTACTTTGGTTTTAGTTACTTTACCGTTGCCCTAC
TCTTTTTTACTTTTATCTTAATCGCCGCAACATTTATCGATCTCGATACTATGTTGTTACCTGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCCTTAGCATTAGTCGAAATAAGTCCTGTTACTCTACAAGATTCTGTCATTGGTGCTATTGC
TGGTTACCTATGTCTCTGGTCCGTTTACTGGGGCTTTAAGTTACTTACCGGTAAAGAAGGAATGGGGTATGGTGATTTTA
AACTACTGGCGGCACTAGGAGCTTGGCTAGGTTGGCAGTCACTGCCGATGATCATTCTACTTTCTTCTGTGGTTGGCATC
GTATTTGGCATCATTCAACTACGCTTGCAAAAGCAGGGAATTGAAAAAGCTTTCCCTTTCGGTCCTTACTTAGCAATTGC
TGGTTGGATAAGCTTAATTTGGGGCGACCAGATTTTAAACTGGTACTTTACTTCAGTTCTAGGAGTGTAA
ATGGAAGTATTCCAGTACTACCCTTGGCTATTCGTTGTGTTTGCCACCATCTTCGGTCTGATCGTGGGTAGCTTCCTCAA
TGTGGTTATTTATCGACTACCTAAAATCATGGAGCTAGAATGGCGACGCGAATGTGCCGAGTCATTTCCTGAATACAAAA
TAGAACCTCCTAAAGAAGTGCTGACCTTGAGCGTTCCACGCTCCTCCTGCCAGAAATGCGCAACACCGATACGTATTCGC
GACAACATTCCTGTGATTAGCTGGCTGCTTTTAAAAGGCAAATGTCACAACTGTCAGGCAACCATTAGTGCACGCTATCC
ACTGATTGAACTGCTCACCGCGTTCTGTTCTGGCTTTATCGCTTATTACTTTGGTTTTAGTTACTTTACCGTTGCCCTAC
TCTTTTTTACTTTTATCTTAATCGCCGCAACATTTATCGATCTCGATACTATGTTGTTACCTGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCCTTAGCATTAGTCGAAATAAGTCCTGTTACTCTACAAGATTCTGTCATTGGTGCTATTGC
TGGTTACCTATGTCTCTGGTCCGTTTACTGGGGCTTTAAGTTACTTACCGGTAAAGAAGGAATGGGGTATGGTGATTTTA
AACTACTGGCGGCACTAGGAGCTTGGCTAGGTTGGCAGTCACTGCCGATGATCATTCTACTTTCTTCTGTGGTTGGCATC
GTATTTGGCATCATTCAACTACGCTTGCAAAAGCAGGGAATTGAAAAAGCTTTCCCTTTCGGTCCTTACTTAGCAATTGC
TGGTTGGATAAGCTTAATTTGGGGCGACCAGATTTTAAACTGGTACTTTACTTCAGTTCTAGGAGTGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio campbellii strain DS40M4 |
91.349 |
100 |
0.913 |
| pilD | Vibrio cholerae strain A1552 |
73.264 |
99.654 |
0.73 |
| pilD | Acinetobacter baumannii D1279779 |
52.222 |
93.426 |
0.488 |
| pilD | Acinetobacter nosocomialis M2 |
51.852 |
93.426 |
0.484 |
| pilD | Neisseria gonorrhoeae MS11 |
47.653 |
95.848 |
0.457 |