Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   AL545_RS11165 Genome accession   NZ_CP014045
Coordinates   599857..601080 (-) Length   407 a.a.
NCBI ID   WP_017820393.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain FDAARGOS_114     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 594857..606080
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL545_RS11130 (AL545_11135) rimM 594990..595538 (+) 549 WP_005379964.1 ribosome maturation factor RimM -
  AL545_RS11135 (AL545_11140) trmD 595566..596327 (+) 762 WP_005385420.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  AL545_RS11140 (AL545_11145) rplS 596369..596722 (+) 354 WP_005379971.1 50S ribosomal protein L19 -
  AL545_RS11145 (AL545_11150) yacG 597187..597381 (-) 195 WP_017635922.1 DNA gyrase inhibitor YacG -
  AL545_RS11150 (AL545_11155) zapD 597540..598280 (-) 741 WP_017820392.1 cell division protein ZapD -
  AL545_RS11155 (AL545_11160) coaE 598308..598922 (-) 615 WP_017635920.1 dephospho-CoA kinase -
  AL545_RS11160 (AL545_11165) pilD 598923..599792 (-) 870 WP_017635919.1 A24 family peptidase Machinery gene
  AL545_RS11165 (AL545_11170) pilC 599857..601080 (-) 1224 WP_017820393.1 type II secretion system F family protein Machinery gene
  AL545_RS11170 (AL545_11175) pilB 601104..602789 (-) 1686 WP_017820394.1 type IV-A pilus assembly ATPase PilB Machinery gene
  AL545_RS11175 (AL545_11180) - 602802..603239 (-) 438 WP_017820395.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  AL545_RS11180 (AL545_11185) nadC 603501..604388 (-) 888 WP_017820396.1 carboxylating nicotinate-nucleotide diphosphorylase -
  AL545_RS11185 (AL545_11190) ampD 604481..605032 (+) 552 WP_005386614.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 45310.50 Da        Isoelectric Point: 10.3992

>NTDB_id=167928 AL545_RS11165 WP_017820393.1 599857..601080(-) (pilC) [Vibrio alginolyticus strain FDAARGOS_114]
MKSTTPQLKNFRWKGINSSGKKTSGQTLAMTEIEVRERLDAQHIKIKKLKKSSISFLTKLNHRVKGRDITVFTRQISTML
ITGVPLVQALKLVSENHKKAEMKSILMSVTRAVEAGAPMSKAMRTASEHFDPLYTDLIATGEQSGNLAEVFERLATYREK
NEQLRAKVIKALIYPAMVVLVALGVSFIMLTKVIPEFEKMFVGFGADLPWFTRQVLDLSAWTQNWSPFIALGSISLFISA
RILSKRSDSFRLMLNRSVLKFPVLGPVLSKAAIAKFSRTLATSFTAGIPILTSLKTTSKTSGNLHYQLAIEEVYRDTAAG
MPMYVAMRNCNVFPELVLQMVMIGEESGRLDDMLNKVATIYEFEVDNTVDNLSKILEPLIIVFLGIVVGGLVTAMYLPIF
NLMSVLG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=167928 AL545_RS11165 WP_017820393.1 599857..601080(-) (pilC) [Vibrio alginolyticus strain FDAARGOS_114]
ATGAAAAGCACTACACCACAACTTAAAAACTTCCGCTGGAAAGGCATCAACAGTTCAGGCAAAAAGACATCTGGGCAAAC
CCTCGCGATGACAGAAATTGAAGTACGCGAGCGTCTAGACGCACAGCACATCAAGATCAAGAAGTTAAAGAAAAGCAGTA
TCTCGTTTCTCACTAAACTCAACCATCGCGTGAAAGGCAGAGACATCACGGTGTTTACCCGTCAGATTTCGACGATGTTG
ATAACCGGTGTACCCTTAGTTCAGGCTTTAAAATTAGTCTCAGAAAATCATAAAAAAGCAGAGATGAAATCCATTTTGAT
GAGCGTGACACGCGCCGTTGAAGCGGGGGCGCCCATGTCAAAAGCCATGCGCACTGCAAGTGAACACTTTGACCCACTCT
ATACTGATCTTATCGCCACAGGTGAGCAATCCGGTAACTTAGCGGAAGTGTTCGAGCGCTTAGCCACCTACCGAGAAAAA
AATGAACAACTCCGTGCGAAAGTGATCAAAGCACTGATTTACCCAGCGATGGTAGTGCTAGTAGCGTTAGGCGTGTCGTT
TATCATGCTCACCAAAGTCATTCCCGAGTTCGAAAAAATGTTTGTTGGTTTTGGTGCTGACTTACCTTGGTTTACCAGGC
AAGTGTTAGATCTTTCCGCCTGGACACAAAACTGGAGTCCGTTTATCGCACTAGGCTCCATTAGTTTATTCATTTCGGCG
AGAATCCTCTCTAAGCGTTCAGATTCTTTTCGCTTAATGCTCAACCGCTCTGTGCTTAAATTTCCGGTCCTTGGGCCTGT
ATTATCAAAAGCCGCTATCGCCAAATTTAGTCGAACACTCGCCACAAGCTTTACAGCGGGTATTCCAATTCTAACCAGTT
TAAAAACCACATCAAAAACCTCAGGAAACTTACACTATCAACTCGCCATAGAAGAAGTTTACCGTGATACCGCCGCAGGT
ATGCCAATGTATGTAGCCATGCGCAACTGTAATGTGTTCCCTGAATTGGTGTTACAAATGGTTATGATCGGTGAAGAGTC
TGGTCGACTTGACGATATGCTCAATAAAGTTGCAACAATCTACGAGTTTGAAGTCGACAACACCGTCGACAACCTTAGTA
AAATCCTAGAGCCACTAATTATCGTTTTTTTAGGTATCGTTGTTGGCGGATTAGTGACAGCAATGTACTTGCCAATCTTT
AACTTAATGAGTGTATTGGGCTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio campbellii strain DS40M4

86.732

100

0.867
  pilC Vibrio cholerae strain A1552

73.529

100

0.737
  pilC Acinetobacter baylyi ADP1

43

98.28

0.423
  pilC Acinetobacter baumannii D1279779

41.439

99.017

0.41
  pilC Legionella pneumophila strain ERS1305867

40.541

100

0.405
  pilG Neisseria gonorrhoeae MS11

40.494

99.509

0.403
  pilG Neisseria meningitidis 44/76-A

40.247

99.509

0.4
  pilC Pseudomonas stutzeri DSM 10701

40.909

97.297

0.398

Multiple sequence alignment