Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   AL543_RS19355 Genome accession   NZ_CP014043
Coordinates   2681644..2683887 (-) Length   747 a.a.
NCBI ID   WP_061052826.1    Uniprot ID   -
Organism   Vibrio mimicus strain FDAARGOS_112     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2676644..2688887
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL543_RS19335 (AL543_18525) kdsB 2677940..2678695 (-) 756 WP_061052824.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  AL543_RS19340 (AL543_18530) - 2678695..2678874 (-) 180 WP_000350065.1 Trm112 family protein -
  AL543_RS19345 (AL543_18535) lpxK 2678855..2679862 (-) 1008 WP_061053091.1 tetraacyldisaccharide 4'-kinase -
  AL543_RS19350 (AL543_18540) msbA 2679865..2681613 (-) 1749 WP_061052825.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  AL543_RS19355 (AL543_18545) comEC 2681644..2683887 (-) 2244 WP_061052826.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  AL543_RS19360 (AL543_18550) - 2683896..2684426 (+) 531 WP_005515139.1 DUF2062 domain-containing protein -
  AL543_RS19365 (AL543_18555) lolE 2684599..2685843 (-) 1245 WP_061052827.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  AL543_RS19370 (AL543_18560) lolD 2685844..2686530 (-) 687 WP_001061285.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  AL543_RS19375 (AL543_18565) lolC 2686523..2687731 (-) 1209 WP_061053092.1 lipoprotein-releasing ABC transporter permease subunit LolC -
  AL543_RS19380 (AL543_18570) - 2687907..2688482 (+) 576 WP_000999599.1 hypothetical protein -

Sequence

Protein


Download         Length: 747 a.a.        Molecular weight: 84219.34 Da        Isoelectric Point: 8.8461

>NTDB_id=167900 AL543_RS19355 WP_061052826.1 2681644..2683887(-) (comEC) [Vibrio mimicus strain FDAARGOS_112]
MTLLSNYWSLISFSITVLSAPYWPWMPTWGWAWFCLILTGLLGYHRTSRKFLGFALAILTIVLHGNLMRDQSNTLYQAGP
DIIIKGKVDSFFAKTRYAYEGLVLIHEVNGQTLNSLMRPRIRLVAPIPLQPNDQFEFSVTLKPVVGRLNETGFDLEAHYM
AHSLVARASVKPNTAYQIVQQSGLRSSLLFQLDALTHTSPFQGLIRALTFGERSGIDEQEWQALRNSGLIHLVAISGLHI
GIAFSLGYLLGAGVMRLHAKLLWSPFVFGALLAVLYAWLAGFTIPTQRALIMCLLNVALVILGFPLSALKRILLTLCAVL
LWSPFASLSNSFWMSFLAVAIVLYQLASQGKRKAWWKALLLAQISLVCLMAPVTAYFFGGLSITAVLYNLVFIPWFSVVI
VPALFLGLALTVTIPTWAALYWPWVDWTFLPLDWALQFADVGWVVIPQSIQGLIAALVVLSLLYRVMSLRACALSLSIVG
LWWWFPSITPLWRMDVLDVGHGLAIVIEQNDRAIIYDTGSSWPGGSYAQNVIEPILQQRGIRRLDGLILSHLDNDHAGDW
QNLAKRWQPSWIRTSQAGVEFVPCVRGESWQWQSLHFDVLWPPQLVSRAYNQHSCVIRMTDAQSNHSVLLSGDVTAMGEW
LLARDGVPLQSDVMIVPHHGSKTSSTAEFIAKVEPQLAIASLAKDNRWNLPHQQVVERYQNQQVQWLDTGQKGQISLFFY
QEQMDWFAQRGLGWEPWYRHMLRKGVE

Nucleotide


Download         Length: 2244 bp        

>NTDB_id=167900 AL543_RS19355 WP_061052826.1 2681644..2683887(-) (comEC) [Vibrio mimicus strain FDAARGOS_112]
ATGACTCTCTTGTCGAATTACTGGTCGCTAATTTCGTTTTCGATCACCGTGCTTTCTGCTCCTTATTGGCCGTGGATGCC
AACATGGGGCTGGGCTTGGTTTTGCCTTATTTTGACGGGTTTGCTCGGTTATCACCGTACAAGCCGAAAATTCCTTGGCT
TCGCGTTGGCCATACTAACTATCGTGCTACATGGCAACCTTATGCGAGATCAATCCAACACGCTCTATCAAGCAGGCCCG
GATATTATCATAAAAGGTAAGGTTGACAGCTTTTTTGCGAAAACTCGTTACGCTTATGAGGGTTTAGTCTTAATTCACGA
GGTGAATGGTCAAACCTTAAACAGCCTCATGAGGCCTCGTATTCGTCTAGTTGCACCTATTCCGTTGCAGCCCAATGATC
AATTCGAATTCTCTGTAACGCTTAAACCTGTTGTTGGTCGCCTAAATGAAACGGGCTTTGATTTGGAAGCCCATTACATG
GCTCACTCTTTGGTCGCGCGAGCCAGTGTTAAACCCAATACTGCTTATCAAATTGTGCAACAGAGTGGCCTAAGGTCAAG
TTTGTTATTTCAACTCGATGCTTTGACTCACACCAGCCCGTTTCAAGGGCTGATACGAGCGCTAACATTTGGGGAGAGAA
GTGGTATTGATGAGCAAGAGTGGCAGGCACTGCGTAACAGCGGCTTAATCCACTTAGTTGCGATTTCTGGTCTGCATATT
GGTATCGCGTTCAGTTTAGGCTATTTACTGGGAGCAGGCGTGATGCGTTTGCATGCCAAGCTACTTTGGTCCCCTTTTGT
GTTTGGCGCTTTGCTTGCGGTGTTGTATGCATGGCTAGCAGGTTTCACCATACCGACTCAACGTGCGCTAATCATGTGCT
TACTCAATGTGGCATTGGTGATCTTGGGTTTTCCTCTTTCGGCTTTAAAGCGGATTTTGCTTACCTTATGCGCCGTTTTA
CTTTGGTCGCCATTCGCGTCGCTCTCAAATAGCTTTTGGATGTCGTTTTTAGCTGTCGCGATTGTGCTTTATCAATTAGC
CAGTCAGGGTAAACGCAAAGCTTGGTGGAAAGCTCTGTTGCTAGCACAAATCTCCCTCGTCTGTTTAATGGCACCTGTTA
CAGCATACTTTTTCGGCGGGTTAAGTATTACGGCGGTTTTGTACAATTTGGTTTTTATACCGTGGTTCTCCGTGGTGATC
GTTCCCGCTTTGTTTTTGGGTTTAGCACTCACAGTAACAATCCCCACTTGGGCTGCGCTTTATTGGCCTTGGGTGGATTG
GACTTTTCTGCCACTTGATTGGGCGCTGCAATTTGCGGATGTGGGTTGGGTAGTGATTCCACAAAGTATACAAGGCCTAA
TTGCTGCATTAGTGGTGCTCAGTTTGCTGTATCGAGTGATGAGCCTACGAGCCTGTGCCTTATCGTTAAGTATCGTTGGC
TTATGGTGGTGGTTTCCTTCCATTACACCGCTTTGGCGTATGGATGTGTTGGATGTGGGGCATGGCTTAGCGATAGTGAT
TGAGCAAAATGACAGGGCTATTATCTACGATACGGGCAGCAGTTGGCCGGGAGGAAGTTACGCACAAAACGTCATTGAAC
CGATTTTGCAGCAGCGTGGAATTCGTCGATTGGATGGCTTGATTTTGAGCCATCTCGATAACGATCATGCGGGCGATTGG
CAAAATCTAGCCAAACGTTGGCAACCAAGTTGGATACGCACAAGCCAAGCTGGTGTGGAATTTGTTCCTTGTGTACGTGG
TGAAAGTTGGCAATGGCAATCTTTGCATTTCGATGTGTTATGGCCGCCGCAACTGGTCAGCCGAGCTTACAATCAACATT
CGTGTGTGATTCGTATGACCGATGCTCAGTCTAACCATTCAGTGCTGCTTTCGGGGGATGTCACCGCAATGGGGGAGTGG
TTGCTCGCACGCGATGGAGTGCCACTGCAAAGTGACGTGATGATTGTGCCACATCACGGCAGTAAAACCTCATCAACCGC
TGAGTTCATCGCGAAAGTTGAGCCACAGTTAGCGATTGCTTCGTTGGCCAAAGATAACCGCTGGAATTTGCCTCACCAGC
AAGTGGTGGAACGTTATCAAAACCAGCAAGTTCAGTGGCTAGATACGGGGCAAAAAGGGCAGATTAGCCTGTTTTTCTAT
CAAGAACAGATGGATTGGTTTGCCCAGCGCGGGCTTGGCTGGGAGCCTTGGTATAGGCATATGCTGCGTAAAGGAGTAGA
ATGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(208-464)

Domain of unknown function (DUF4131) (DUF4131)

(24-172)

Metallo-beta-lactamase superfamily (Lactamase_B)

(499-676)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio cholerae strain A1552

82.731

100

0.827
  comEC Vibrio campbellii strain DS40M4

41.645

100

0.42
  comEC Vibrio parahaemolyticus RIMD 2210633

40.903

100

0.412

Multiple sequence alignment