Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   AL543_RS08665 Genome accession   NZ_CP014043
Coordinates   392129..392761 (+) Length   210 a.a.
NCBI ID   WP_000242749.1    Uniprot ID   A0A6G8D3R0
Organism   Vibrio mimicus strain FDAARGOS_112     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 387129..397761
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL543_RS08640 (AL543_07905) - 387214..389130 (+) 1917 WP_061051672.1 ABC transporter ATP-binding protein -
  AL543_RS08645 (AL543_07910) - 389131..389616 (+) 486 WP_061051673.1 TIGR02444 family protein -
  AL543_RS08650 (AL543_07915) - 389613..390602 (+) 990 WP_061051674.1 hydrolase -
  AL543_RS08655 (AL543_07920) - 390712..390921 (+) 210 WP_000586576.1 YheU family protein -
  AL543_RS08660 (AL543_07925) - 391017..391886 (+) 870 WP_001274669.1 phosphoribulokinase -
  AL543_RS08665 (AL543_07930) crp 392129..392761 (+) 633 WP_000242749.1 cAMP-activated global transcriptional regulator CRP Regulator
  AL543_RS08670 (AL543_07935) - 392827..393618 (-) 792 WP_061051675.1 DUF1338 domain-containing protein -
  AL543_RS08675 (AL543_07940) astD 393715..395172 (-) 1458 WP_061051676.1 succinylglutamate-semialdehyde dehydrogenase -
  AL543_RS08680 (AL543_07945) astA 395182..396201 (-) 1020 WP_061051677.1 arginine N-succinyltransferase -
  AL543_RS08685 (AL543_07950) - 396351..397562 (-) 1212 WP_061051678.1 aspartate aminotransferase family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23635.45 Da        Isoelectric Point: 8.2784

>NTDB_id=167868 AL543_RS08665 WP_000242749.1 392129..392761(+) (crp) [Vibrio mimicus strain FDAARGOS_112]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERTAWVRAKTPCEVAEISFKKFRQLIQVNPDILMRLSGQMARRLQVTSQKVGDLAFLDVTGRIAQTLLNLARQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=167868 AL543_RS08665 WP_000242749.1 392129..392761(+) (crp) [Vibrio mimicus strain FDAARGOS_112]
ATGGTTCTAGGTAAACCTCAAACCGATCCAACACTAGAGTGGTTTCTTTCACATTGTCACATTCATAAGTACCCATCAAA
AAGCACGCTGATCCATGCGGGTGAGAAAGCGGAAACGCTGTACTACATCGTTAAAGGTTCAGTTGCGGTACTGATTAAAG
ATGAAGAAGGTAAAGAGATGATCCTCTCTTACCTGAACCAAGGTGACTTCATCGGTGAACTCGGCTTGTTTGAAGAAGGC
CAAGAGCGTACCGCTTGGGTTCGTGCTAAAACACCGTGTGAAGTGGCTGAGATCTCATTTAAGAAATTCCGTCAGTTGAT
CCAAGTAAACCCTGACATCTTGATGCGCCTTTCAGGTCAAATGGCTCGTCGTCTGCAAGTGACCAGCCAGAAAGTTGGCG
ACCTTGCGTTCCTAGACGTAACTGGCCGTATCGCTCAAACTCTACTGAACCTTGCGCGTCAGCCAGACGCGATGACTCAC
CCAGATGGCATGCAGATCAAGATCACTCGTCAAGAGATCGGTCAAATCGTTGGCTGTTCTCGTGAAACCGTTGGCCGCAT
CCTGAAGATGCTGGAAGAGCAGAACCTGATCTCTGCCCACGGTAAAACCATCGTGGTTTACGGTACTCGCTAA

Domains

Predicted by InterproScan.

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G8D3R0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

100

100

1
  crp Haemophilus influenzae Rd KW20

75.49

97.143

0.733
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467

Multiple sequence alignment