Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   AL541_RS03695 Genome accession   NZ_CP014040
Coordinates   756217..758502 (+) Length   761 a.a.
NCBI ID   WP_104978931.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain FDAARGOS_110     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 751217..763502
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL541_RS03670 (AL541_12045) - 751577..752146 (-) 570 WP_025766933.1 hypothetical protein -
  AL541_RS03675 (AL541_12050) lolC 752395..753603 (+) 1209 WP_031778997.1 lipoprotein-releasing ABC transporter permease subunit LolC -
  AL541_RS03680 (AL541_12055) lolD 753596..754303 (+) 708 WP_104978929.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  AL541_RS03685 (AL541_12060) lolE 754306..755550 (+) 1245 WP_086046604.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  AL541_RS03690 (AL541_12065) - 755699..756208 (-) 510 WP_005387834.1 DUF2062 domain-containing protein -
  AL541_RS03695 (AL541_12070) comEC 756217..758502 (+) 2286 WP_104978931.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  AL541_RS03700 (AL541_12075) - 758506..759495 (-) 990 WP_104978932.1 glycosyltransferase -
  AL541_RS03705 (AL541_12080) msbA 759840..761588 (+) 1749 WP_104978934.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  AL541_RS03710 (AL541_12085) lpxK 761594..762601 (+) 1008 WP_104978935.1 tetraacyldisaccharide 4'-kinase -
  AL541_RS03715 (AL541_12090) - 762582..762761 (+) 180 WP_104978937.1 Trm112 family protein -

Sequence

Protein


Download         Length: 761 a.a.        Molecular weight: 85456.54 Da        Isoelectric Point: 8.1037

>NTDB_id=167818 AL541_RS03695 WP_104978931.1 756217..758502(+) (comEC) [Vibrio alginolyticus strain FDAARGOS_110]
MTLSEKSWTLALFVASVISSAWWPTIPDWRWLLLGIITTGSIIKLRRGLISIGAIAGFMVVIVHGNVLESQRQALFQAGE
NITIIGKVDSPFTQISHGYEGIVAIEAVNSQTLLPFLKPKIRLITPFPLDVNSEFTTSISLKPITGLRNEAGFDAEKHAM
GKNIIARAVVNKDAKWIVRSNVSLRQSIIADVADDVSSLHHFSLISALVFADRSWLSKEDWQALRDSGLLHLVSISGLHI
GMAFTFGLVVGGTVRYLLPQYQLLPSLYGLIFAVAYAWLADFSLPTTRAVSVCVVYVLLKYTLVHWTSWRVLLLAVSLQL
LVQPFASYSMSFWLSYLSVCAVLFAINLIQHQRGDWKTKLKAVLLTQLMLGALIVPVSGHFFSGFSLSSIAYNLVFIPWF
GFIVVPLMFLALFSSLFLEMIAKPLWHLVDWSLQPLSTSIQYAIGSWQPISMEMTMLVMAIVVCLIFQRFMSQYAWYLLL
GIVISIKLASEYEPHWRIDVLDVGHGLAVVVEKDDKVLLYDTGKAWQSGSIAEQVVTPVLHQRGYESIDTLILSHSDNDH
AGGRFFIEDAFSPQRKLSSQFFIEYEPCTRGDQWKWQGLNMEVLWPPALVQRAYNPHSCVLRLTDPISNFSMLFTGDIEA
ISEWILLREPGKLQSDVMLVPHHGSKSSSNPRFIEAVSPSVAVASLAKNNRWGMPAENVVASYRKLGITWLDTGEGGQVS
FFIHRDNWRSETKRSDTFEPWYRQMLRSGTNIKRPNVELGL

Nucleotide


Download         Length: 2286 bp        

>NTDB_id=167818 AL541_RS03695 WP_104978931.1 756217..758502(+) (comEC) [Vibrio alginolyticus strain FDAARGOS_110]
ATGACTCTCTCAGAAAAAAGTTGGACCTTGGCGTTATTTGTAGCGAGCGTAATCTCGTCAGCTTGGTGGCCGACAATACC
AGATTGGCGTTGGTTGCTGCTGGGAATAATAACCACTGGCTCAATAATCAAATTACGTCGTGGCTTAATTAGCATAGGCG
CAATTGCGGGCTTTATGGTTGTCATCGTCCACGGCAATGTATTGGAGTCTCAGAGACAAGCCCTTTTTCAAGCAGGGGAG
AATATTACCATAATTGGTAAAGTTGACAGCCCTTTTACGCAAATAAGTCACGGTTATGAAGGTATTGTCGCTATAGAAGC
GGTAAATTCTCAAACTCTGTTACCTTTTCTTAAACCTAAAATCCGTCTTATTACGCCTTTTCCACTCGATGTTAACAGTG
AGTTTACGACATCCATCTCGTTAAAGCCGATTACAGGTCTACGCAACGAAGCTGGCTTTGATGCTGAAAAGCACGCGATG
GGTAAAAATATTATCGCCCGAGCGGTTGTTAACAAAGATGCTAAGTGGATTGTTCGTTCTAATGTATCTCTGCGTCAATC
CATTATTGCCGATGTCGCTGATGATGTGTCTTCCCTTCATCATTTCTCGTTAATAAGTGCGTTAGTTTTTGCTGACCGTT
CTTGGTTGTCTAAGGAAGATTGGCAAGCGCTCAGGGACAGTGGTTTACTGCATTTGGTCTCCATTTCTGGTTTACATATT
GGTATGGCGTTTACTTTTGGGCTAGTCGTGGGCGGTACCGTTCGTTATCTATTACCCCAATACCAGTTGTTACCTAGCTT
ATATGGGCTGATTTTCGCTGTTGCCTACGCTTGGTTAGCGGATTTCTCTCTACCTACTACGCGAGCAGTGTCGGTATGCG
TTGTTTACGTTCTCCTGAAGTATACTCTGGTGCACTGGACTTCTTGGCGAGTTCTTTTGCTTGCAGTATCTCTACAACTG
CTTGTCCAACCTTTTGCATCCTACAGTATGAGCTTTTGGTTATCATACCTCTCCGTTTGTGCGGTATTGTTCGCAATTAA
TTTGATTCAACATCAAAGGGGAGATTGGAAAACGAAATTAAAAGCGGTATTGCTTACTCAATTGATGTTGGGCGCTTTAA
TCGTACCTGTTAGTGGCCATTTCTTTTCCGGTTTTAGTTTGTCCTCAATAGCCTACAACTTGGTATTTATTCCTTGGTTC
GGATTTATCGTTGTACCTTTGATGTTTCTAGCCCTGTTCTCATCTTTGTTTCTTGAAATGATAGCGAAGCCTCTGTGGCA
TTTGGTGGACTGGTCATTACAGCCATTGAGCACGTCAATACAGTACGCAATAGGTTCTTGGCAACCTATTAGCATGGAAA
TGACAATGCTGGTTATGGCGATAGTGGTTTGCTTAATATTTCAACGGTTCATGTCTCAGTACGCGTGGTATTTGTTACTC
GGCATCGTTATTAGTATCAAGCTTGCATCGGAGTATGAACCGCATTGGCGTATCGATGTATTAGATGTAGGTCATGGCCT
TGCAGTGGTTGTAGAAAAAGACGACAAGGTGTTGCTGTATGACACTGGTAAAGCATGGCAAAGCGGCAGTATCGCAGAGC
AGGTCGTCACTCCGGTTTTGCATCAACGAGGTTATGAAAGCATAGATACACTGATTCTAAGCCATTCCGATAATGATCAC
GCAGGCGGCCGCTTTTTCATTGAAGATGCTTTTTCTCCACAACGTAAACTTAGTAGTCAATTCTTTATCGAATATGAGCC
TTGCACTAGAGGCGACCAATGGAAATGGCAAGGATTAAACATGGAAGTGCTCTGGCCTCCTGCACTTGTTCAACGTGCGT
ATAATCCGCACTCCTGTGTATTACGACTTACTGACCCTATTTCTAACTTTAGTATGCTTTTTACTGGTGATATTGAGGCC
ATTAGCGAGTGGATTTTGCTTAGAGAACCCGGAAAGTTACAAAGCGATGTGATGCTAGTCCCTCACCACGGGAGTAAAAG
TTCATCGAATCCTCGATTTATCGAGGCGGTGAGCCCGAGTGTGGCAGTTGCTTCTTTAGCAAAAAACAATCGATGGGGAA
TGCCAGCGGAAAATGTCGTTGCTTCATACCGAAAGCTTGGCATTACTTGGCTTGATACTGGTGAGGGTGGTCAGGTAAGC
TTCTTTATTCACCGTGATAATTGGCGCTCAGAAACCAAACGTAGCGATACATTTGAGCCTTGGTATAGGCAGATGCTGCG
TAGCGGAACTAATATAAAAAGACCTAATGTCGAATTAGGTCTGTAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(208-465)

Metallo-beta-lactamase superfamily (Lactamase_B)

(503-685)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio parahaemolyticus RIMD 2210633

69.292

98.423

0.682
  comEC Vibrio campbellii strain DS40M4

66.176

98.292

0.65
  comEC Vibrio cholerae strain A1552

43.369

99.08

0.43

Multiple sequence alignment