Detailed information NTG0167779

Bioinformatically predicted

Overview

• Name: ccpA
• Type: Regulator
• Locus tag: A4W88_RS02035
• Genome accession: NZ_CP017275
• Coordinates: 424800..425801 (+)
• Length: 333 a.a.
• NCBI ID: WP_011374124.1
• Uniprot ID: Q38YL1
• Organism: Latilactobacillus sakei strain TMW 1.1398
• Function: regulate comCDE transcription and transformation (predicted from homology) Competence regulation

Genomic Context

Location: 419800..430801

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
A4W88_RS02010 (A4W88_01990)	-	419847..420734 (-)	888	WP_011374119.1	mechanosensitive ion channel family protein	-
A4W88_RS02015 (A4W88_02000)	-	420822..421891 (+)	1070	WP_157779289.1	IS3-like element IS1520 family transposase	-
A4W88_RS02020 (A4W88_02005)	-	422197..422631 (+)	435	WP_016264674.1	DUF948 domain-containing protein	-
A4W88_RS02025 (A4W88_02010)	-	422637..423074 (+)	438	WP_011374121.1	YtxH domain-containing protein	-
A4W88_RS02030 (A4W88_02015)	-	423486..424583 (-)	1098	WP_076632520.1	Xaa-Pro peptidase family protein	-
A4W88_RS02035 (A4W88_02020)	ccpA	424800..425801 (+)	1002	WP_011374124.1	catabolite control protein A	Regulator
A4W88_RS02040	-	425849..426580 (-)	732	WP_251930904.1	penicillin-binding transpeptidase domain-containing protein	-
A4W88_RS02045 (A4W88_02025)	-	426514..428403 (-)	1890	WP_251930905.1	transglycosylase domain-containing protein	-
A4W88_RS02050 (A4W88_02030)	-	428687..429394 (+)	708	WP_011374126.1	glucosamine-6-phosphate deaminase	-
A4W88_RS02055 (A4W88_02035)	-	429587..430483 (-)	897	WP_035148033.1	IS3 family transposase	-

Sequence

Protein

• Length: 333 a.a.
• Molecular weight: 36359.58 Da
• Isoelectric Point: 4.7994

>NTDB_id=167779 A4W88_RS02035 WP_011374124.1 424800..425801(+) (ccpA) [Latilactobacillus sakei strain TMW 1.1398]
MEKQTITIYDVAREADVSMATVSRVVNGNPNVKPATRKKVLEVIDRLDYRPNAVARGLASKKTTTVGVIIPDVSDIYFAS
LARGIDDVATMYKYNIILANSDENNQKEVQVLNTLLAKQVDGLIYMGHSISDAIRAEFARSKTPIVLAGSIDPDEQVGSV
NIDYVAAVKDATLKLIKNGNEKVAFICGNLEFPINSKYRLRGYKDALNEAGIPYDESLIFETEYSYSAGEALFGKVQAIG
ATAAVVSDDELAVGVLNAAVDAGVNIPTDFEIVTSNNTKLTEMVRPKMTSISQPLYDMGAVGMRLLTKMMNKEEIDDKTI
LLPYSIVDRQSTK

Nucleotide

• Length: 1002 bp

>NTDB_id=167779 A4W88_RS02035 WP_011374124.1 424800..425801(+) (ccpA) [Latilactobacillus sakei strain TMW 1.1398]
ATGGAAAAACAAACAATTACAATTTACGACGTTGCGCGTGAAGCTGACGTATCAATGGCGACCGTCTCACGGGTTGTTAA
CGGGAACCCCAACGTTAAGCCTGCCACTCGCAAGAAAGTGCTTGAAGTGATCGACCGTTTAGACTATCGTCCTAACGCTG
TTGCTCGTGGTTTGGCAAGTAAGAAAACAACAACTGTTGGGGTTATTATCCCAGACGTTAGTGATATCTACTTTGCTTCA
TTAGCACGCGGAATTGATGATGTTGCCACAATGTACAAGTACAACATCATTTTAGCGAACTCAGATGAAAACAACCAAAA
GGAAGTTCAAGTATTGAATACCTTATTGGCGAAACAAGTAGATGGTTTAATCTACATGGGTCACAGTATCTCAGATGCAA
TCCGTGCTGAATTCGCCCGTTCTAAGACACCAATCGTGTTAGCTGGTTCAATCGATCCAGACGAACAAGTCGGTAGTGTT
AATATTGACTACGTTGCAGCCGTTAAGGACGCAACTTTGAAGTTAATCAAGAACGGTAACGAAAAAGTCGCCTTCATCTG
TGGCAACTTAGAGTTCCCAATCAACAGCAAATATCGTTTACGTGGCTATAAAGATGCTTTGAACGAAGCTGGTATTCCTT
ATGACGAAAGCTTAATTTTCGAAACAGAATACAGTTACAGTGCTGGTGAAGCCTTATTCGGTAAGGTTCAAGCAATTGGC
GCAACTGCTGCTGTTGTCAGTGACGATGAATTAGCCGTAGGTGTTTTAAATGCTGCTGTTGATGCAGGTGTTAATATTCC
AACTGACTTTGAAATTGTGACAAGTAATAACACGAAGTTAACTGAAATGGTTCGTCCTAAGATGACATCAATCTCACAAC
CTTTATATGATATGGGTGCTGTTGGGATGCGTCTGTTAACGAAGATGATGAACAAAGAAGAAATCGATGATAAGACAATC
CTATTGCCATATAGCATTGTTGATCGTCAATCAACTAAATAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (7-52)

• Periplasmic binding protein-like domain (Peripla_BP_3) (175-332)

3D structure

• AlphaFold DB: Q38YL1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ccpA	Streptococcus pneumoniae D39	62.31	98.799	0.616
ccpA	Streptococcus gordonii str. Challis substr. CH1	60.486	98.799	0.598
ccpA	Lactococcus lactis subsp. lactis strain DGCC12653	56.456	100	0.565