Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   AL537_RS09620 Genome accession   NZ_CP014036
Coordinates   1956984..1959242 (+) Length   752 a.a.
NCBI ID   WP_104971452.1    Uniprot ID   -
Organism   Vibrio diabolicus strain FDAARGOS_105     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1951984..1964242
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL537_RS09595 (AL537_09595) - 1952343..1952912 (-) 570 WP_104971449.1 PilZ domain-containing protein -
  AL537_RS09600 (AL537_09600) lolC 1953162..1954370 (+) 1209 WP_167394144.1 lipoprotein-releasing ABC transporter permease subunit LolC -
  AL537_RS09605 (AL537_09605) lolD 1954363..1955070 (+) 708 WP_046874713.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  AL537_RS09610 (AL537_09610) lolE 1955073..1956317 (+) 1245 WP_104971451.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  AL537_RS09615 (AL537_09615) - 1956466..1956975 (-) 510 WP_006742150.1 DUF2062 domain-containing protein -
  AL537_RS09620 (AL537_09620) comEC 1956984..1959242 (+) 2259 WP_104971452.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  AL537_RS09625 (AL537_09625) msbA 1959274..1961022 (+) 1749 WP_005390646.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  AL537_RS09630 (AL537_09630) lpxK 1961028..1962035 (+) 1008 WP_104971453.1 tetraacyldisaccharide 4'-kinase -
  AL537_RS09635 (AL537_09635) - 1962016..1962195 (+) 180 WP_005390649.1 Trm112 family protein -
  AL537_RS09640 (AL537_09640) kdsB 1962195..1962950 (+) 756 WP_005390653.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 752 a.a.        Molecular weight: 84344.33 Da        Isoelectric Point: 8.3542

>NTDB_id=167752 AL537_RS09620 WP_104971452.1 1956984..1959242(+) (comEC) [Vibrio diabolicus strain FDAARGOS_105]
MTLSEKSWTLALFVASVISSAWWPTIPDWRWLLLGIITTGSIIKLRRGLISIGAIAGFMVVIVHGNVLESQRQALFQAGE
NITIIGKVDSPFTQISHGYEGIVALKKVNSQTLLPFLKPKIRLITPFPLDVNSEFTTSVSLKPITGLRNEAGFDAEKHAM
GKNIIARGVVNKDVTWIIRSTTSLRQAIIADVSEDVSSLHHFSLINALVFADRSWLSKEDWQALRDSGLLHLVSISGLHI
GMAFTFGLVVGGAIRYALPQYQLLPSLCGLMFAVAYAWLADFSLPTTRAVSVCIIYVVLKYTLVHWASWRVLLLAVALQL
LVQPFASYSMSFWLSYLSVCAVLFAINLIRHQNGGWKAKLKVLLLTQLMLSVLIVPISGYYFSGFSLSSIAYNLAFIPWF
GFIVVPLMFLALFSSLFLEMIAKPLWQLVDWSLQPLSTSIQYAIGSWQPISIEMTGLILAGIICLVFQRFMFQYGWCLLL
GIVISIKLTSEYDQQHWRIDVLDVGHGLAVIVEKDDKVLLYDTGKAWQNGSIAEQVVTPVLHKRGYESIDTMILSHSDND
HAGGRLFIEDAFSPQRKLSSQNFIGYESCTRGEHWKWQGLNIEVLWPPALVQRAYNPHSCVLRLTDPISTFSMLFTGDIE
TISEWILLRGPEKLKSDVMLVPHHGSKSSSNPRFIEAVNPSVAVASLAKNNQWGMPAEHVVAAYRKLDITWLDTGEYGQV
SFSIHRDNWRSETKSSDTFEPWYRQMLRKGVE

Nucleotide


Download         Length: 2259 bp        

>NTDB_id=167752 AL537_RS09620 WP_104971452.1 1956984..1959242(+) (comEC) [Vibrio diabolicus strain FDAARGOS_105]
ATGACTCTCTCAGAAAAAAGTTGGACCTTGGCGTTATTTGTAGCGAGCGTAATTTCGTCAGCTTGGTGGCCGACAATACC
AGATTGGCGTTGGCTGCTGCTGGGAATAATAACCACTGGCTCAATAATCAAATTACGTCGTGGCTTAATTAGCATAGGCG
CAATTGCGGGCTTTATGGTTGTCATCGTCCACGGCAATGTATTGGAGTCTCAGAGACAAGCCCTTTTTCAAGCAGGGGAG
AATATTACCATAATTGGTAAAGTTGACAGCCCTTTTACGCAAATAAGTCACGGATATGAAGGCATTGTGGCTCTAAAAAA
GGTAAATTCTCAAACTCTGTTACCTTTTCTTAAACCTAAAATCCGTCTTATTACGCCTTTTCCACTCGATGTTAACAGTG
AGTTTACGACATCCGTCTCGTTAAAGCCGATTACAGGCCTACGCAACGAAGCTGGTTTTGATGCCGAAAAGCACGCAATG
GGTAAAAACATTATCGCACGCGGTGTTGTTAACAAGGATGTTACCTGGATTATTCGCTCTACTACATCTTTGCGCCAAGC
CATTATCGCTGATGTTTCGGAGGATGTGTCCTCCCTTCATCATTTCTCGTTAATAAATGCGTTAGTTTTTGCCGATCGCT
CTTGGTTATCTAAGGAGGATTGGCAAGCACTCAGAGACAGTGGTTTACTGCACTTGGTCTCGATTTCGGGCTTACATATT
GGTATGGCGTTCACTTTTGGGCTAGTGGTGGGCGGTGCCATTCGTTATGCGTTACCTCAATACCAGCTATTGCCTAGCTT
ATGTGGGCTGATGTTTGCCGTTGCCTATGCTTGGTTAGCTGACTTCTCATTACCTACTACCCGCGCGGTGTCGGTATGTA
TTATTTACGTCGTTCTCAAATATACCTTAGTGCACTGGGCTTCCTGGCGGGTACTTTTGCTCGCGGTAGCGCTACAACTG
CTTGTTCAACCTTTTGCATCGTATAGCATGAGTTTTTGGTTATCGTATTTGTCAGTTTGCGCAGTGTTGTTCGCAATCAA
TTTGATTCGGCATCAAAACGGGGGCTGGAAGGCGAAGTTAAAAGTGCTACTGCTTACTCAATTGATGTTGAGTGTGTTAA
TCGTGCCTATTAGTGGCTATTACTTTTCTGGTTTCAGTTTGTCATCAATTGCATACAACTTGGCGTTTATTCCTTGGTTC
GGATTTATCGTTGTGCCTTTGATGTTTCTGGCCCTGTTCTCATCTTTATTTCTTGAAATGATAGCAAAGCCTCTGTGGCA
GTTGGTGGACTGGTCATTGCAGCCATTGAGCACGTCAATTCAGTACGCGATAGGCTCCTGGCAACCCATTAGTATAGAAA
TGACAGGGTTGATTCTGGCGGGAATTATTTGCTTGGTGTTTCAACGATTCATGTTTCAGTACGGGTGGTGTTTGTTACTT
GGCATTGTAATTAGTATTAAGCTCACATCGGAATATGATCAGCAACATTGGCGCATTGATGTACTAGATGTGGGCCATGG
CCTTGCGGTGATTGTAGAAAAAGACGATAAAGTGTTGCTCTATGATACAGGTAAAGCATGGCAAAATGGCAGCATTGCGG
AGCAGGTAGTCACTCCGGTCTTGCATAAACGAGGTTATGAAAGCATCGATACGATGATCCTCAGCCATTCCGACAATGAC
CATGCAGGAGGACGCTTGTTCATTGAAGATGCCTTTTCGCCACAGCGCAAACTCAGTAGCCAAAATTTTATCGGATATGA
GTCTTGTACTCGCGGCGAACATTGGAAATGGCAAGGATTAAATATAGAAGTACTTTGGCCTCCTGCTCTTGTTCAACGTG
CATATAATCCGCACTCCTGTGTGCTACGTCTTACCGACCCTATTTCTACGTTCAGTATGCTTTTTACTGGTGATATTGAG
ACCATTAGCGAGTGGATCTTGCTCAGGGGGCCTGAAAAGTTAAAAAGTGATGTGATGTTGGTCCCTCATCATGGTAGTAA
AAGTTCGTCGAATCCTCGCTTTATTGAGGCGGTAAACCCGAGTGTGGCCGTTGCTTCTTTGGCAAAAAATAATCAATGGG
GAATGCCAGCAGAACATGTTGTTGCAGCATATCGCAAGCTTGACATTACTTGGCTTGATACTGGGGAATATGGTCAGGTA
AGCTTCTCTATTCACCGTGATAATTGGCGCTCAGAAACCAAAAGTAGCGATACATTTGAGCCTTGGTATAGGCAGATGCT
GCGTAAGGGAGTAGAATGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(208-466)

Metallo-beta-lactamase superfamily (Lactamase_B)

(504-686)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio parahaemolyticus RIMD 2210633

70.745

100

0.707
  comEC Vibrio campbellii strain DS40M4

65.691

100

0.657
  comEC Vibrio cholerae strain A1552

41.722

100

0.419

Multiple sequence alignment