Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   AL536_RS38160 Genome accession   NZ_CP014035
Coordinates   1652454..1654574 (-) Length   706 a.a.
NCBI ID   WP_061057229.1    Uniprot ID   -
Organism   Vibrio fluvialis strain ATCC 33809     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1647454..1659574
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL536_RS38140 (AL536_15305) kdsB 1648759..1649502 (-) 744 WP_020327783.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  AL536_RS38145 (AL536_15310) - 1649502..1649681 (-) 180 WP_020327784.1 Trm112 family protein -
  AL536_RS38150 (AL536_15315) lpxK 1649662..1650669 (-) 1008 WP_061056668.1 tetraacyldisaccharide 4'-kinase -
  AL536_RS38155 (AL536_15320) msbA 1650673..1652421 (-) 1749 WP_020327786.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  AL536_RS38160 (AL536_15325) comEC 1652454..1654574 (-) 2121 WP_061057229.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  AL536_RS38165 (AL536_15330) - 1654700..1655230 (+) 531 WP_020327788.1 DUF2062 domain-containing protein -
  AL536_RS38170 (AL536_15335) lolE 1655363..1656607 (-) 1245 WP_020327789.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  AL536_RS38175 (AL536_15340) lolD 1656608..1657294 (-) 687 WP_061056669.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  AL536_RS38180 (AL536_15345) lolC 1657287..1658495 (-) 1209 WP_055453396.1 lipoprotein-releasing ABC transporter permease subunit LolC -
  AL536_RS38185 (AL536_15350) - 1658671..1659240 (+) 570 WP_024373531.1 hypothetical protein -

Sequence

Protein


Download         Length: 706 a.a.        Molecular weight: 78912.32 Da        Isoelectric Point: 9.1267

>NTDB_id=167688 AL536_RS38160 WP_061057229.1 1652454..1654574(-) (comEC) [Vibrio fluvialis strain ATCC 33809]
MTTLVVSRFRVFGGIALALLVIVTHGNVVRSQSNTIFQAGQDITIKGEVDSFFKQISYGYEGTVVVRSINGQQLHTFWQP
KVRLIAPVDLQIGDQFEFSVMVKPVYGRRNEAGFDLEAYYFSQGWVARVNVKPQSKFEVVSTPNFRSMLYRQIKTWTQNS
PSQGMILALTFGDRNGIHEAEWRSLRNSGLIHLVAISGLHIGMAFAIGYLIGTAMMRLHVSLLWMPFVSGMCIAAIYAWL
AGFTLPTQRALLMCGLNVALTMSGVRVTAVQRILITLAAVLIVTPFAPLSNSFWLSFLAVALVLYQLADRTTRHGWRKWL
TVQCSLVTMMIPVSAYFFSGFSVSSALYNLIFIPYFSFVIVPLLFLALFLTTFVGDITWLWRGIDLSFWPLQRALEWAGS
SWIAVSQTATVVFSVGLLLWVCRPVLSWRAQLYAGIALLGFGFFTPHDERWRVDILDVGHGLAVLIERNHNALLYDTGSG
WPEGSYVRSLIVPILNQRGMDSLDGLILSHTDNDHAGGLKDAETLLSPKWVVASQSGPNWQACHTGEQWEWQGLTMTALW
PPQTVNRAYNLQSCVIRLSDPEYGHSLLLAGDVTAVGEWLLSRQPMDIQSDVIIVPHHGSKTSSTRQFIERVSPQVAIAS
LAKGNQWQLPHRSVVARYVDAGSDWLDTGEAGQITLTYQAQSRQLSTLRQIGNPSWYRQMLRKGVE

Nucleotide


Download         Length: 2121 bp        

>NTDB_id=167688 AL536_RS38160 WP_061057229.1 1652454..1654574(-) (comEC) [Vibrio fluvialis strain ATCC 33809]
ATGACCACGCTCGTGGTGAGCCGATTCAGAGTTTTTGGCGGGATCGCGCTTGCCTTGTTAGTGATAGTAACACACGGCAA
CGTTGTGAGATCTCAATCCAACACTATTTTTCAAGCAGGGCAGGATATTACCATAAAAGGTGAAGTTGACAGCTTTTTTA
AGCAAATTAGTTATGGTTATGAAGGGACTGTAGTAGTCAGATCAATCAATGGACAACAATTGCACACTTTTTGGCAGCCG
AAGGTGCGGTTAATTGCTCCGGTCGATCTGCAAATTGGCGATCAGTTTGAGTTTTCTGTAATGGTTAAACCCGTTTATGG
CCGCCGTAATGAGGCCGGTTTTGACTTAGAAGCTTACTACTTCAGTCAGGGTTGGGTTGCGAGAGTGAACGTTAAACCTC
AGTCAAAATTTGAGGTCGTTTCAACGCCGAATTTTCGCAGTATGTTGTACCGCCAAATCAAAACATGGACGCAAAACAGC
CCTTCTCAAGGCATGATCTTGGCGCTGACATTTGGTGACCGCAACGGCATTCATGAAGCTGAATGGCGCTCACTGAGAAA
TAGCGGACTCATCCATCTGGTGGCGATATCCGGTTTGCATATTGGCATGGCGTTCGCGATTGGTTATCTGATTGGAACTG
CGATGATGCGGCTGCATGTCAGTTTGCTGTGGATGCCTTTCGTTTCCGGGATGTGTATTGCCGCGATTTATGCATGGCTG
GCAGGATTTACCTTGCCGACCCAGCGCGCTTTGTTGATGTGCGGTCTCAACGTCGCTCTCACGATGAGTGGCGTGCGTGT
GACGGCGGTGCAGCGAATCCTTATCACCCTTGCTGCGGTATTAATCGTGACGCCGTTTGCGCCGCTCTCCAACAGTTTCT
GGCTCTCATTCTTGGCGGTCGCGTTGGTTTTGTATCAATTGGCAGACCGAACAACACGTCATGGCTGGCGAAAATGGCTG
ACGGTGCAATGCTCGTTAGTCACTATGATGATTCCAGTTTCCGCGTATTTTTTCTCCGGGTTCAGTGTTTCGTCGGCACT
CTATAACCTGATTTTTATTCCTTACTTCAGCTTTGTCATCGTCCCGCTGCTGTTTCTCGCACTGTTTCTCACTACCTTTG
TCGGAGATATCACCTGGCTGTGGCGTGGGATTGACCTGAGCTTCTGGCCACTGCAGCGGGCACTGGAATGGGCGGGATCG
AGCTGGATTGCTGTAAGTCAGACGGCGACGGTCGTATTTAGTGTTGGCCTTCTCCTTTGGGTTTGCCGCCCGGTATTAAG
CTGGCGAGCTCAACTCTATGCGGGAATTGCATTACTTGGCTTTGGCTTTTTTACCCCACACGATGAGCGTTGGCGAGTTG
ATATCCTTGATGTCGGGCACGGTCTGGCAGTGTTGATTGAACGGAATCACAACGCCCTGTTGTACGACACCGGCAGTGGC
TGGCCTGAAGGCAGTTACGTTCGCTCTTTGATTGTTCCAATACTCAATCAGCGCGGTATGGACTCTCTGGATGGTTTAAT
TCTCAGCCATACAGACAATGACCACGCTGGTGGTTTAAAAGATGCCGAAACCTTATTGTCCCCGAAATGGGTTGTGGCGA
GTCAGTCTGGTCCAAATTGGCAGGCTTGCCACACGGGAGAACAGTGGGAATGGCAAGGACTGACGATGACGGCACTGTGG
CCGCCGCAAACCGTCAATCGTGCTTATAATCTGCAGTCGTGCGTGATTCGATTAAGCGATCCTGAATACGGTCATTCACT
ACTTCTGGCTGGCGATGTTACGGCAGTCGGTGAGTGGTTACTCAGTCGGCAACCCATGGATATTCAGAGCGATGTCATCA
TTGTGCCTCATCACGGCAGTAAAACGTCCTCAACGCGTCAGTTTATCGAGCGGGTTTCCCCGCAAGTGGCCATTGCGTCT
CTGGCGAAAGGGAATCAATGGCAGTTGCCGCATCGCAGTGTGGTGGCGCGTTATGTGGATGCGGGGTCCGACTGGCTTGA
TACTGGCGAGGCGGGGCAAATCACTCTGACTTATCAAGCTCAATCCCGGCAGCTATCGACTCTGCGCCAAATAGGAAATC
CTTCATGGTATAGGCAGATGCTACGTAAAGGGGTAGAATGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(169-422)

Metallo-beta-lactamase superfamily (Lactamase_B)

(458-639)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio cholerae strain A1552

53.561

99.433

0.533
  comEC Vibrio parahaemolyticus RIMD 2210633

43.509

99.292

0.432
  comEC Vibrio campbellii strain DS40M4

42.33

99.717

0.422

Multiple sequence alignment