Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   AL533_RS19095 Genome accession   NZ_CP014019
Coordinates   3982076..3982891 (+) Length   271 a.a.
NCBI ID   WP_004711686.1    Uniprot ID   A0A836Z055
Organism   Acinetobacter nosocomialis strain FDAARGOS_129     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3977076..3987891
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL533_RS19060 (AL533_19060) - 3977663..3977793 (-) 131 Protein_3704 hypothetical protein -
  AL533_RS19065 (AL533_19065) rpoZ 3977832..3978110 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  AL533_RS19070 (AL533_19070) gmk 3978183..3978812 (-) 630 WP_016803891.1 guanylate kinase -
  AL533_RS19075 (AL533_19075) ispH 3978935..3979885 (+) 951 WP_002051768.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  AL533_RS19080 (AL533_19080) fimU 3980054..3980527 (+) 474 WP_016803890.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  AL533_RS19085 (AL533_19085) pilV 3980521..3981081 (+) 561 WP_079377028.1 type IV pilus modification protein PilV Machinery gene
  AL533_RS19090 (AL533_19090) pilW 3981081..3982079 (+) 999 WP_004884688.1 PilW family protein Machinery gene
  AL533_RS19095 (AL533_19095) pilX 3982076..3982891 (+) 816 WP_004711686.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  AL533_RS19665 - 3982891..3983076 (+) 186 Protein_3712 hypothetical protein -
  AL533_RS19100 (AL533_19100) - 3984106..3987075 (+) 2970 Protein_3713 PilC/PilY family type IV pilus protein -
  AL533_RS19105 (AL533_19105) pilY2 3987088..3987570 (+) 483 WP_004884685.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 271 a.a.        Molecular weight: 28881.67 Da        Isoelectric Point: 6.6293

>NTDB_id=167331 AL533_RS19095 WP_004711686.1 3982076..3982891(+) (pilX) [Acinetobacter nosocomialis strain FDAARGOS_129]
MTHLRSKYIVQHHQKGATLIVVLIILLIVIAVGVLAIRVAIVSLKVATNSQIGQLNFQSSDTPIQLITQMDPTTLTNISN
VLGAALKENESHPGSEYNFCYKPVSTTVSFAQTRDASLLRAGTANNAVVEDGGVAGFCDLTTDYGSNRQAVVTQIAVSIP
TDAVNDVPGSNLPRGTNASEGTALPKSMLSTQRIRVISTSFLPAYASTSMQTLQADCLSTNSAKISDNFDSSLSNKQTLA
DCLANHNVPFSTQIQEFNYTNKLTETMAPGS

Nucleotide


Download         Length: 816 bp        

>NTDB_id=167331 AL533_RS19095 WP_004711686.1 3982076..3982891(+) (pilX) [Acinetobacter nosocomialis strain FDAARGOS_129]
ATGACCCATTTGAGAAGCAAATATATAGTCCAACATCATCAAAAAGGTGCGACGCTTATTGTTGTGCTTATTATTTTGTT
AATTGTTATTGCTGTGGGGGTTTTAGCCATTAGGGTGGCTATTGTTTCTTTGAAAGTTGCAACAAATAGCCAAATTGGGC
AATTAAATTTTCAATCTTCTGATACTCCTATACAGCTCATCACCCAGATGGATCCAACGACGCTTACAAATATTAGTAAT
GTGTTAGGAGCAGCACTTAAAGAAAATGAGAGTCATCCTGGATCGGAATATAATTTTTGCTATAAGCCAGTTTCGACCAC
TGTAAGTTTTGCCCAAACCCGAGATGCGAGTCTACTGCGAGCAGGAACTGCTAACAATGCCGTGGTAGAGGATGGAGGAG
TGGCTGGCTTTTGTGACCTGACCACTGATTATGGAAGTAATCGTCAAGCTGTCGTTACACAAATTGCTGTAAGCATTCCA
ACAGATGCCGTTAATGATGTTCCAGGTTCAAATTTACCACGCGGAACAAATGCGTCTGAAGGTACTGCTTTACCAAAGAG
TATGCTTTCTACACAACGCATTCGAGTGATTTCAACTTCTTTTTTACCTGCTTATGCTTCTACCTCAATGCAAACTTTGC
AAGCAGATTGTTTGAGTACAAATAGTGCCAAGATCAGCGATAACTTTGATAGCTCATTAAGTAATAAACAAACGTTAGCT
GATTGTTTGGCAAATCATAACGTACCTTTTAGTACTCAGATTCAAGAATTTAACTATACCAATAAACTTACTGAAACTAT
GGCGCCAGGTTCATAA

Domains

Predicted by InterproScan.

PilX N-terminal (PilX_N)

(15-59)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A836Z055

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

82.353

100

0.827

Multiple sequence alignment