Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   BHT24_RS15110 Genome accession   NZ_CP017220
Coordinates   2905367..2906104 (+) Length   245 a.a.
NCBI ID   WP_000197673.1    Uniprot ID   -
Organism   Escherichia coli strain FAM21845     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2900367..2911104
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BHT24_RS15095 (BHT24_14460) clpC 2900821..2903394 (-) 2574 WP_021553788.1 ATP-dependent chaperone ClpB Regulator
  BHT24_RS15100 (BHT24_14465) yfiH 2903524..2904255 (-) 732 WP_021553789.1 purine nucleoside phosphorylase YfiH -
  BHT24_RS15105 (BHT24_14470) rluD 2904252..2905232 (-) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  BHT24_RS15110 (BHT24_14475) comL 2905367..2906104 (+) 738 WP_000197673.1 outer membrane protein assembly factor BamD Machinery gene
  BHT24_RS15120 (BHT24_14485) raiA 2906375..2906716 (+) 342 WP_057107649.1 ribosome-associated translation inhibitor RaiA -
  BHT24_RS27490 pheL 2906820..2906867 (+) 48 WP_001700969.1 pheA operon leader peptide PheL -
  BHT24_RS15125 (BHT24_14490) pheA 2906966..2908126 (+) 1161 WP_000200101.1 bifunctional chorismate mutase/prephenate dehydratase -
  BHT24_RS15130 (BHT24_14495) tyrA 2908169..2909290 (-) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  BHT24_RS15135 (BHT24_14500) aroF 2909301..2910371 (-) 1071 WP_044864299.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  BHT24_RS15140 (BHT24_14505) yfiL 2910581..2910946 (+) 366 WP_044864298.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27843.47 Da        Isoelectric Point: 7.1587

>NTDB_id=167056 BHT24_RS15110 WP_000197673.1 2905367..2906104(+) (comL) [Escherichia coli strain FAM21845]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPKSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=167056 BHT24_RS15110 WP_000197673.1 2905367..2906104(+) (comL) [Escherichia coli strain FAM21845]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAAAAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.115

99.592

0.38
  comL Neisseria gonorrhoeae MS11

37.295

99.592

0.371

Multiple sequence alignment