Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   BHT24_RS15505 Genome accession   NZ_CP017220
Coordinates   2967967..2968482 (-) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain FAM21845     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2962967..2973482
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BHT24_RS15480 (BHT24_14820) ygaZ 2963366..2964103 (+) 738 WP_000445658.1 L-valine exporter subunit YgaZ -
  BHT24_RS15485 (BHT24_14825) ygaH 2964093..2964428 (+) 336 WP_000119750.1 L-valine transporter subunit YgaH -
  BHT24_RS15490 (BHT24_14830) emrR 2964519..2965049 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  BHT24_RS15495 (BHT24_14835) emrA 2965176..2966348 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  BHT24_RS15500 (BHT24_14840) emrB 2966365..2967903 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  BHT24_RS15505 (BHT24_14845) luxS 2967967..2968482 (-) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  BHT24_RS15510 (BHT24_14850) gshA 2968632..2970188 (-) 1557 WP_000611812.1 glutamate--cysteine ligase -
  BHT24_RS15515 (BHT24_14855) yqaA 2970261..2970689 (-) 429 WP_001287454.1 YqaA family protein -
  BHT24_RS15520 (BHT24_14860) yqaB 2970686..2971252 (-) 567 WP_000273292.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  BHT24_RS15550 (BHT24_14890) csrA 2972710..2972895 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=167057 BHT24_RS15505 WP_001130211.1 2967967..2968482(-) (luxS) [Escherichia coli strain FAM21845]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=167057 BHT24_RS15505 WP_001130211.1 2967967..2968482(-) (luxS) [Escherichia coli strain FAM21845]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment