Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   APT62_RS00055 Genome accession   NZ_CP013988
Coordinates   10155..10703 (-) Length   182 a.a.
NCBI ID   WP_026465541.1    Uniprot ID   A0A9W7S2J3
Organism   Aerococcus urinaeequi strain USDA-ARS-USMARC-56713     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5155..15703
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  APT62_RS00035 (APT62_00035) - 7111..8145 (+) 1035 WP_003142898.1 branched-chain amino acid aminotransferase -
  APT62_RS00040 (APT62_00040) - 8223..9290 (+) 1068 WP_026465544.1 iron-containing alcohol dehydrogenase family protein -
  APT62_RS00045 (APT62_00045) - 9449..9829 (+) 381 WP_026465543.1 VOC family protein -
  APT62_RS00050 (APT62_00050) rpsR 9892..10128 (-) 237 WP_026465542.1 30S ribosomal protein S18 -
  APT62_RS00055 (APT62_00055) ssb 10155..10703 (-) 549 WP_026465541.1 single-stranded DNA-binding protein Machinery gene
  APT62_RS00060 (APT62_00060) rpsF 10740..11042 (-) 303 WP_003142910.1 30S ribosomal protein S6 -
  APT62_RS00065 (APT62_00065) gyrA 11205..13784 (-) 2580 WP_026465540.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20014.46 Da        Isoelectric Point: 4.4023

>NTDB_id=166878 APT62_RS00055 WP_026465541.1 10155..10703(-) (ssb) [Aerococcus urinaeequi strain USDA-ARS-USMARC-56713]
MINNVVLVGRLTRDVDVRYTQSGVAVGSFSVAVERNFKNAQGERETDFINCVIWRKAAENFARFTRKGSLVGVEGSIQTR
NYENNQGQRVYVTEILVDNFSLLESKSVTESRPASDNNNSGFGGFNNNNANNNSYNNQNADPFDGNSFNQNSSSFNNGND
NPFPSSNDGSGSINVTDDDLPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=166878 APT62_RS00055 WP_026465541.1 10155..10703(-) (ssb) [Aerococcus urinaeequi strain USDA-ARS-USMARC-56713]
ATGATTAATAATGTTGTACTGGTCGGCCGTTTAACTCGTGACGTTGATGTGCGTTATACGCAAAGTGGCGTTGCTGTTGG
ATCTTTCAGCGTTGCCGTTGAAAGAAACTTTAAAAATGCCCAAGGTGAACGTGAGACAGATTTTATTAACTGTGTTATCT
GGCGTAAAGCAGCAGAGAATTTTGCGCGTTTTACCCGTAAAGGTTCATTAGTAGGTGTTGAAGGCAGCATCCAAACTCGA
AACTACGAGAATAACCAAGGACAACGTGTATACGTTACTGAGATTTTGGTTGATAACTTTAGTTTATTAGAATCAAAATC
AGTTACTGAAAGCCGCCCTGCCTCTGATAATAATAACAGTGGTTTTGGTGGATTTAATAACAATAACGCAAACAACAACA
GCTATAACAATCAAAATGCTGATCCATTTGATGGAAACAGCTTTAATCAAAACTCCTCTTCATTTAACAATGGTAACGAT
AACCCATTCCCATCATCTAATGATGGTTCTGGTTCAATCAATGTTACCGATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

58.791

100

0.588
  ssbA Bacillus subtilis subsp. subtilis str. 168

50

100

0.5

Multiple sequence alignment