Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   BFP66_RS07640 Genome accession   NZ_CP017142
Coordinates   1541644..1542294 (-) Length   216 a.a.
NCBI ID   WP_024395987.1    Uniprot ID   -
Organism   Streptococcus suis strain GZ0565     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1536644..1547294
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BFP66_RS07620 (BFP66_07620) xseA 1536685..1538028 (-) 1344 WP_044674153.1 exodeoxyribonuclease VII large subunit -
  BFP66_RS07625 (BFP66_07625) - 1538195..1539103 (+) 909 WP_024395989.1 neutral zinc metallopeptidase -
  BFP66_RS07630 (BFP66_07630) - 1539312..1539863 (-) 552 WP_015647209.1 isoprenylcysteine carboxyl methyltransferase family protein -
  BFP66_RS07635 (BFP66_07635) - 1540254..1541642 (-) 1389 WP_069358633.1 sensor histidine kinase -
  BFP66_RS07640 (BFP66_07640) scnR 1541644..1542294 (-) 651 WP_024395987.1 response regulator transcription factor Regulator
  BFP66_RS07645 (BFP66_07645) - 1542526..1543227 (+) 702 WP_024382375.1 CPBP family intramembrane glutamic endopeptidase -
  BFP66_RS07650 (BFP66_07650) - 1543461..1544717 (+) 1257 WP_069358634.1 ISL3 family transposase -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 24668.81 Da        Isoelectric Point: 4.8839

>NTDB_id=166819 BFP66_RS07640 WP_024395987.1 1541644..1542294(-) (scnR) [Streptococcus suis strain GZ0565]
MSRILVVEDDIVISQVVCEFLKEHGYQVESVFDGKIALERFQEEQFDLIVLDIMIPSMTGLEVLKEIRKTSQVPILMLTA
MGDEYTQLISFNQIISDYVVKPFSPTILVKRIENILRGKGETDSIEIGAILIQPTSGAVYMEEEEVQLTKKEYEVLLYLA
KRRGKIVSRDNLMMGIWGYTELDSRVLDNHIKNIRKKLPSLPLKTVVGRGYQIEGT

Nucleotide


Download         Length: 651 bp        

>NTDB_id=166819 BFP66_RS07640 WP_024395987.1 1541644..1542294(-) (scnR) [Streptococcus suis strain GZ0565]
ATGTCAAGGATCTTGGTTGTCGAGGATGACATAGTTATTAGTCAAGTTGTTTGTGAGTTTTTAAAAGAACATGGTTATCA
GGTAGAATCTGTTTTTGATGGAAAGATTGCTTTAGAAAGGTTTCAAGAAGAACAATTCGATTTAATTGTTTTAGATATCA
TGATTCCGTCTATGACAGGTTTGGAAGTACTGAAGGAAATTCGCAAAACTTCTCAGGTTCCAATTTTGATGCTGACAGCC
ATGGGTGACGAATATACACAGCTTATTAGTTTTAATCAGATTATAAGTGATTATGTTGTTAAACCGTTTTCACCAACTAT
ATTGGTAAAACGGATTGAGAATATTTTGAGAGGAAAAGGAGAGACAGATAGCATTGAGATAGGAGCAATTCTTATTCAAC
CAACTAGCGGGGCAGTTTATATGGAAGAAGAAGAAGTTCAATTGACGAAAAAAGAATATGAAGTTTTATTATATTTAGCT
AAACGACGTGGGAAAATTGTTAGTCGTGATAACTTGATGATGGGAATATGGGGATATACGGAATTGGATAGTCGTGTCTT
AGATAATCATATCAAGAATATCCGTAAGAAATTGCCGTCACTTCCTTTGAAGACAGTAGTTGGTCGTGGTTATCAAATAG
AGGGTACTTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-113)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(144-213)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

38.767

100

0.407
  micA Streptococcus pneumoniae Cp1015

38.667

100

0.403
  vicR Streptococcus mutans UA159

37.168

100

0.389