Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG/mmsA   Type   Machinery gene
Locus tag   BFP66_RS01710 Genome accession   NZ_CP017142
Coordinates   320531..322549 (+) Length   672 a.a.
NCBI ID   WP_063725164.1    Uniprot ID   -
Organism   Streptococcus suis strain GZ0565     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 315531..327549
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BFP66_RS01710 (BFP66_01710) recG/mmsA 320531..322549 (+) 2019 WP_063725164.1 ATP-dependent DNA helicase RecG Machinery gene
  BFP66_RS01725 (BFP66_01725) - 324059..325018 (-) 960 WP_014637479.1 asparaginase -
  BFP66_RS11085 - 325088..326453 (+) 1366 Protein_299 Cof-type HAD-IIB family hydrolase -
  BFP66_RS01740 (BFP66_01740) tnpA 326618..327082 (+) 465 WP_002939996.1 IS200/IS605-like element ISSsu4 family transposase -

Sequence

Protein


Download         Length: 672 a.a.        Molecular weight: 75761.26 Da        Isoelectric Point: 6.2223

>NTDB_id=166772 BFP66_RS01710 WP_063725164.1 320531..322549(+) (recG/mmsA) [Streptococcus suis strain GZ0565]
MKRLYDELSVLPGIGPKSAEKFLKINIQNINDLLTYYPFRYEDFESKSIYDLQDGEKAVVVGEVVSPANVQYYGYKRNRL
RFSMKQGEVVLAVSFFNQPYLADKIVLGQDIAVWGKWDKAKASLTGMKILAQVSDELQPVYHVAQGISQVNLVKAIKTAI
DQGYLHLLEENLPSVLRERYRLMNRREAVFAMHFPTNLEEYRQALRRMKFEELFYFQLQLQMLKANNRDISNGLKIAYDV
DRLAMQIRQLPFVLTDAQSGALAEILSDMKSYGHMNRLLQGDVGSGKTVVAGLAMFAAVTAGMQAAIMVPTEILAEQHFE
SLRQLFPELSIALLTGGMKAAERRTALEAISSGQVDIIVGTHALIQESVTYHKLGLVVTDEQHRFGVKQRRLFREKGDNP
DVLMMTATPIPRTLAITAFGDMDVSIINQLPAGRKPIITRWVKHQQLPTVLDWLERELEVGAQVYFISPLIEESEALDLK
NAVDLQSDLQAHFGEQVAVDLLHGKMKNDEKDAIMQAFKERKTNILVSTTVIEVGVNVPNATVMVIMDADRFGLSQLHQL
RGRVGRGHKQSYAVLVANPKTESGKERMKIMTETTDGFILAEADLKMRGSGEIFGTRQSGLPEFQVANIIEDYPILEEAR
RVASQIVSVENWQEDTNWSILLANLKDREELD

Nucleotide


Download         Length: 2019 bp        

>NTDB_id=166772 BFP66_RS01710 WP_063725164.1 320531..322549(+) (recG/mmsA) [Streptococcus suis strain GZ0565]
ATGAAAAGATTATATGATGAATTATCGGTTTTGCCAGGGATTGGTCCAAAATCAGCTGAAAAATTCTTAAAAATTAACAT
TCAGAATATTAATGATTTACTGACTTACTATCCATTTAGATATGAAGATTTTGAGAGTAAGTCTATTTATGATTTGCAGG
ATGGGGAGAAGGCAGTGGTAGTTGGGGAGGTGGTATCTCCAGCTAATGTACAGTATTATGGTTACAAAAGAAATAGACTC
CGTTTTTCAATGAAACAGGGTGAGGTTGTCTTAGCAGTTTCGTTTTTTAATCAGCCTTATTTAGCAGATAAGATTGTTTT
GGGGCAGGATATTGCAGTTTGGGGAAAGTGGGATAAGGCTAAGGCAAGTTTGACAGGAATGAAAATTTTGGCTCAAGTAT
CAGATGAGCTCCAACCTGTCTATCATGTGGCGCAAGGGATTTCGCAAGTAAATTTGGTTAAGGCTATTAAAACAGCTATT
GATCAGGGATATTTGCATTTATTAGAGGAGAACTTGCCATCAGTTTTACGAGAGCGCTATCGATTAATGAATCGCCGAGA
GGCGGTTTTTGCGATGCATTTTCCTACAAATTTAGAAGAGTATAGACAAGCTTTGCGACGTATGAAGTTTGAGGAATTAT
TTTATTTTCAATTACAGTTGCAAATGCTGAAAGCCAACAATCGTGATATTTCGAATGGTTTGAAGATTGCCTATGATGTT
GATAGATTGGCTATGCAAATAAGACAATTGCCGTTTGTCTTAACAGATGCTCAGTCTGGGGCTTTGGCTGAAATACTATC
AGATATGAAGTCCTATGGGCACATGAATCGTTTGTTACAAGGGGATGTTGGTTCAGGGAAGACAGTAGTTGCTGGATTGG
CTATGTTTGCTGCTGTGACTGCGGGGATGCAGGCTGCAATTATGGTGCCGACAGAAATTTTGGCTGAGCAACACTTTGAG
AGTTTGCGCCAGCTTTTTCCAGAACTTTCTATTGCTCTTTTGACAGGTGGAATGAAAGCTGCGGAGCGTCGTACTGCTTT
AGAGGCGATTTCTAGTGGTCAGGTAGACATCATTGTAGGAACTCACGCTCTTATCCAGGAAAGTGTGACGTACCATAAGC
TTGGTTTGGTTGTGACTGATGAGCAACATCGTTTTGGTGTTAAACAGCGCCGTCTGTTTCGTGAGAAGGGTGATAATCCG
GATGTGCTTATGATGACTGCTACACCTATTCCTCGGACGTTAGCCATTACAGCTTTTGGAGATATGGATGTATCGATTAT
TAATCAGTTACCTGCTGGTCGGAAGCCAATTATCACTCGCTGGGTCAAACATCAACAGCTGCCCACGGTCTTAGATTGGT
TGGAGCGGGAGTTAGAAGTGGGTGCTCAGGTTTATTTTATCTCTCCGCTGATTGAAGAATCTGAGGCTCTAGATTTAAAG
AATGCTGTAGATCTGCAATCTGATTTACAGGCGCATTTTGGAGAGCAAGTTGCAGTGGATTTGTTACACGGTAAGATGAA
GAATGACGAGAAAGATGCCATCATGCAGGCTTTTAAGGAGCGAAAAACGAATATTTTGGTTTCTACCACCGTTATTGAAG
TCGGAGTCAATGTGCCCAATGCAACGGTGATGGTTATTATGGATGCAGATCGTTTTGGTTTAAGCCAATTACATCAGTTG
AGAGGGCGTGTAGGACGTGGTCATAAGCAGTCTTATGCAGTGTTAGTTGCTAATCCTAAAACAGAGTCTGGTAAGGAACG
CATGAAAATTATGACAGAGACGACAGATGGTTTTATTTTGGCTGAAGCAGACTTAAAAATGCGTGGGTCTGGAGAGATAT
TTGGGACTCGTCAATCAGGTTTGCCAGAATTTCAGGTTGCAAATATTATCGAGGACTATCCAATTTTAGAGGAAGCAAGA
CGAGTTGCTAGTCAGATTGTTAGCGTGGAAAATTGGCAGGAGGACACTAATTGGTCGATTTTGCTTGCTAATTTGAAAGA
TCGAGAGGAATTGGACTAG

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(255-410)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(594-667)

RecG wedge domain (RecG_wedge)

(13-160)

Helicase conserved C-terminal domain (Helicase_C)

(459-567)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG/mmsA Streptococcus pneumoniae R6

72.197

99.554

0.719
  recG/mmsA Streptococcus pneumoniae R36A

72.197

99.554

0.719
  recG Bacillus subtilis subsp. subtilis str. 168

48.933

97.619

0.478
  recG Neisseria meningitidis strain C311

39.939

96.875

0.387