Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   AUL54_RS08820 Genome accession   NZ_CP013950
Coordinates   1854163..1855116 (-) Length   317 a.a.
NCBI ID   WP_060963606.1    Uniprot ID   -
Organism   Bacillus sp. SDLI1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1849163..1860116
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AUL54_RS08800 (AUL54_08805) - 1850042..1851466 (+) 1425 WP_060963604.1 MDR family MFS transporter -
  AUL54_RS08805 (AUL54_08810) - 1851508..1852452 (-) 945 WP_060963605.1 siderophore ABC transporter substrate-binding protein -
  AUL54_RS08810 (AUL54_08815) - 1852474..1853232 (-) 759 WP_047476235.1 ABC transporter ATP-binding protein -
  AUL54_RS08815 (AUL54_08820) - 1853226..1854173 (-) 948 WP_045926247.1 iron chelate uptake ABC transporter family permease subunit -
  AUL54_RS08820 (AUL54_08825) ceuB 1854163..1855116 (-) 954 WP_060963606.1 ABC transporter permease Machinery gene
  AUL54_RS08825 (AUL54_08830) - 1855532..1856896 (+) 1365 WP_060963607.1 aspartate kinase -
  AUL54_RS20670 - 1856992..1857090 (+) 99 WP_016937260.1 YjcZ family sporulation protein -
  AUL54_RS08830 (AUL54_08835) phrC 1857233..1857352 (-) 120 WP_016937261.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  AUL54_RS08835 (AUL54_08840) rapC 1857336..1858484 (-) 1149 WP_045926250.1 tetratricopeptide repeat protein Regulator
  AUL54_RS08840 (AUL54_08845) - 1858638..1860071 (-) 1434 WP_162492439.1 HAMP domain-containing sensor histidine kinase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34971.26 Da        Isoelectric Point: 9.6741

>NTDB_id=166466 AUL54_RS08820 WP_060963606.1 1854163..1855116(-) (ceuB) [Bacillus sp. SDLI1]
MKLRYLLLLLAVLACTSIFIGVEDLSPLDIFHLNKEQASTLFDSRLPRLVSIIIAGMSLSICGLIMQQISRNKFVSPTTA
GTMDWARLGILISLMLFTSASPLVKMSIAFIFALAGNFLFMKILERIKFNDAIFIPLVGLMLGNIVSSVATFIAYKYDLI
QNLSSWLQGDFSLVVKGRYELLYLSIPLLIIAYVYADKFTVAGMGESFSVNLGLKYKRVVNIGLIIVSLIASLVILTVGM
LPFLGLIIPNIVSIYKGDNLRSSLPHTALLGAVFVLFCDILGRVIIFPYEISIGLMVGVIGSGIFLYMLLRRKAYES

Nucleotide


Download         Length: 954 bp        

>NTDB_id=166466 AUL54_RS08820 WP_060963606.1 1854163..1855116(-) (ceuB) [Bacillus sp. SDLI1]
ATGAAGCTACGTTACTTACTTTTGCTACTGGCGGTATTGGCGTGTACTTCTATTTTTATCGGTGTAGAAGACTTGTCGCC
GCTGGATATTTTTCATTTAAATAAAGAACAGGCAAGTACATTATTTGACAGCCGGCTGCCGCGTTTGGTGAGCATTATTA
TTGCCGGCATGAGCCTGAGCATCTGCGGATTAATCATGCAGCAGATCAGCCGGAATAAATTTGTATCGCCGACGACTGCG
GGAACGATGGACTGGGCAAGGCTCGGGATTTTGATTTCATTAATGCTTTTTACGTCAGCGAGTCCGCTTGTAAAAATGTC
TATCGCTTTTATTTTCGCGTTGGCGGGAAATTTCCTGTTCATGAAAATCCTCGAGAGAATCAAGTTTAATGATGCGATTT
TTATTCCTCTCGTCGGTTTAATGCTTGGGAATATCGTCAGTTCAGTCGCCACGTTTATCGCGTATAAATACGATCTGATC
CAAAATCTGTCGTCCTGGCTGCAGGGGGATTTCTCATTGGTCGTCAAAGGCCGGTACGAGCTTTTATATCTGAGTATCCC
GCTTTTGATCATCGCTTATGTCTATGCGGATAAATTTACGGTGGCGGGAATGGGAGAGAGCTTTTCCGTCAATCTCGGCC
TGAAATACAAACGCGTCGTCAATATCGGTCTGATTATCGTGTCGCTTATCGCTTCACTTGTGATTCTGACCGTCGGGATG
CTGCCGTTTCTCGGTTTGATCATTCCCAATATCGTGTCGATCTACAAAGGGGACAACCTGAGGAGCAGTCTGCCCCACAC
AGCTCTCTTGGGCGCTGTTTTTGTGCTGTTTTGCGACATTTTGGGAAGGGTGATCATCTTCCCTTACGAAATTTCCATCG
GCCTGATGGTCGGTGTGATCGGCAGCGGCATCTTCCTGTATATGCTGTTAAGGAGAAAAGCATATGAGTCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.165

99.685

0.53

Multiple sequence alignment