Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrC   Type   Regulator
Locus tag   AUL54_RS08830 Genome accession   NZ_CP013950
Coordinates   1857233..1857352 (-) Length   39 a.a.
NCBI ID   WP_016937261.1    Uniprot ID   -
Organism   Bacillus sp. SDLI1     
Function   antagonize RapC (predicted from homology)   
Competence regulation

Genomic Context

Location: 1852233..1862352
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AUL54_RS08810 (AUL54_08815) - 1852474..1853232 (-) 759 WP_047476235.1 ABC transporter ATP-binding protein -
  AUL54_RS08815 (AUL54_08820) - 1853226..1854173 (-) 948 WP_045926247.1 iron chelate uptake ABC transporter family permease subunit -
  AUL54_RS08820 (AUL54_08825) ceuB 1854163..1855116 (-) 954 WP_060963606.1 ABC transporter permease Machinery gene
  AUL54_RS08825 (AUL54_08830) - 1855532..1856896 (+) 1365 WP_060963607.1 aspartate kinase -
  AUL54_RS20670 - 1856992..1857090 (+) 99 WP_016937260.1 YjcZ family sporulation protein -
  AUL54_RS08830 (AUL54_08835) phrC 1857233..1857352 (-) 120 WP_016937261.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  AUL54_RS08835 (AUL54_08840) rapC 1857336..1858484 (-) 1149 WP_045926250.1 tetratricopeptide repeat protein Regulator
  AUL54_RS08840 (AUL54_08845) - 1858638..1860071 (-) 1434 WP_162492439.1 HAMP domain-containing sensor histidine kinase -
  AUL54_RS08845 (AUL54_08850) - 1860058..1860741 (-) 684 WP_060963609.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4214.93 Da        Isoelectric Point: 8.0284

>NTDB_id=166467 AUL54_RS08830 WP_016937261.1 1857233..1857352(-) (phrC) [Bacillus sp. SDLI1]
MKLKSKWFVICLAAAAIFTVAGAGQTDQADFHVTERGMT

Nucleotide


Download         Length: 120 bp        

>NTDB_id=166467 AUL54_RS08830 WP_016937261.1 1857233..1857352(-) (phrC) [Bacillus sp. SDLI1]
ATGAAATTGAAATCTAAATGGTTTGTTATTTGTTTAGCAGCCGCCGCGATTTTTACAGTTGCAGGTGCAGGCCAGACAGA
TCAGGCTGACTTCCATGTAACTGAAAGAGGAATGACGTGA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrC Bacillus subtilis subsp. subtilis str. 168

77.5

100

0.795

Multiple sequence alignment