Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   AWC37_RS12855 Genome accession   NZ_CP013922
Coordinates   2704190..2704705 (+) Length   171 a.a.
NCBI ID   WP_029378816.1    Uniprot ID   -
Organism   Staphylococcus xylosus strain S170     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2699190..2709705
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AWC37_RS12830 (AWC37_12755) - 2700261..2701145 (+) 885 WP_029378812.1 mechanosensitive ion channel family protein -
  AWC37_RS12835 (AWC37_12760) - 2701167..2701382 (+) 216 WP_029378813.1 DUF951 domain-containing protein -
  AWC37_RS12840 (AWC37_12765) ychF 2701382..2702479 (+) 1098 WP_042363431.1 redox-regulated ATPase YchF -
  AWC37_RS12845 (AWC37_12770) - 2702631..2703437 (-) 807 WP_081225230.1 GH25 family lysozyme -
  AWC37_RS12850 (AWC37_12775) rpsF 2703866..2704171 (+) 306 WP_017723387.1 30S ribosomal protein S6 -
  AWC37_RS12855 (AWC37_12780) ssbA 2704190..2704705 (+) 516 WP_029378816.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19075.58 Da        Isoelectric Point: 4.9056

>NTDB_id=166137 AWC37_RS12855 WP_029378816.1 2704190..2704705(+) (ssbA) [Staphylococcus xylosus strain S170]
MINRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRKQADNVNNYLFKGSLAGVDGRIQSR
SYENQEGRRVFVTEVVCDSVQFLEPKNQNQRHGQEGNNNFQNFGGQQSGQNTSSYQNNNNNNNNTSNNNQSDNPFANANG
PIDISDDDLPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=166137 AWC37_RS12855 WP_029378816.1 2704190..2704705(+) (ssbA) [Staphylococcus xylosus strain S170]
ATGATAAATAGAGTTGTTTTAGTCGGTCGTTTAACGAAAGATCCAGAATATAGAACAACACCCTCAGGCGTGAGTGTTGC
GACTTTTACTCTAGCAGTAAACCGTACGTTTACAAATGCGCAAGGGGAACGCGAAGCAGATTTCATTAATTGTGTCGTTT
TTAGAAAACAAGCAGATAATGTAAATAACTACTTATTCAAAGGTAGTTTAGCTGGCGTTGACGGTCGCATTCAATCACGT
AGCTATGAAAACCAAGAAGGGCGTCGTGTTTTTGTAACTGAAGTAGTTTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TCAAAACCAACGTCATGGCCAAGAAGGGAATAATAATTTCCAAAACTTTGGTGGACAACAATCAGGACAAAATACATCGT
CATATCAAAATAACAATAATAACAACAACAATACATCAAATAATAATCAATCAGATAACCCATTTGCAAATGCAAACGGA
CCTATTGATATTAGTGATGACGACTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

63.372

100

0.637
  ssb Latilactobacillus sakei subsp. sakei 23K

58.286

100

0.596
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.091

64.327

0.38

Multiple sequence alignment