Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaH   Type   Regulator
Locus tag   A7J08_RS04480 Genome accession   NZ_CP017088
Coordinates   886119..887498 (+) Length   459 a.a.
NCBI ID   WP_105178521.1    Uniprot ID   -
Organism   Streptococcus suis strain SRD478     
Function   repress competence development; post-transcriptional repression of CSP production (predicted from homology)   
Competence regulation

Genomic Context

Location: 881119..892498
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A7J08_RS04450 (A7J08_04305) pstA 881545..882432 (+) 888 WP_105106214.1 phosphate ABC transporter permease PstA -
  A7J08_RS04455 (A7J08_04310) pstB 882457..883260 (+) 804 WP_002940866.1 phosphate ABC transporter ATP-binding protein PstB -
  A7J08_RS04460 (A7J08_04315) pstB 883272..884030 (+) 759 WP_002937614.1 phosphate ABC transporter ATP-binding protein PstB -
  A7J08_RS04465 (A7J08_04320) phoU 884059..884715 (+) 657 WP_002937611.1 phosphate signaling complex protein PhoU -
  A7J08_RS04470 (A7J08_04325) - 884881..885261 (+) 381 WP_148115713.1 hypothetical protein -
  A7J08_RS04475 (A7J08_04330) ciaR 885455..886126 (+) 672 WP_024400692.1 response regulator transcription factor Regulator
  A7J08_RS04480 (A7J08_04335) ciaH 886119..887498 (+) 1380 WP_105178521.1 HAMP domain-containing sensor histidine kinase Regulator
  A7J08_RS04485 - 887668..888956 (-) 1289 Protein_816 IS4 family transposase -
  A7J08_RS04490 (A7J08_04350) - 889453..890682 (+) 1230 WP_053866986.1 transglutaminase domain-containing protein -
  A7J08_RS04495 (A7J08_04355) rpsT 890949..891197 (-) 249 WP_012027069.1 30S ribosomal protein S20 -
  A7J08_RS04500 (A7J08_04360) coaA 891256..892176 (-) 921 WP_002935283.1 type I pantothenate kinase -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 51923.61 Da        Isoelectric Point: 6.8879

>NTDB_id=166022 A7J08_RS04480 WP_105178521.1 886119..887498(+) (ciaH) [Streptococcus suis strain SRD478]
MPKRFKKLMYTDKFSFFIRYFAVFTLIFGLMTAIIFQLMRSTMYQNSDNTLKRIKKEPALAVGFAIARTYEPNSVFILQD
SPTGEETTSSSSDSMSVPKNQKNTRAGDQLRLGANTHVLLYSKSGEMINPDTFTGLADLSLDKEKLGEIKETTVESSFGM
SEDYRYITIGLATDELGYYSSYDIKYATILVNVSQIKSSIESYESTVAIVMVSAWLISILASIYLSNLSMRPILISYQKQ
KDFVENASHELRTPLAVLQNRLESLFRHPETTILESSESIGSSLEEVRNMRLLTTNLLNLARRDDGLKVDMIDVQPNYFD
EIFANYLMIAEENGKTLTVNNLIHQPIRTDKVLIKQLLTILFDNAMKYTDDDGTIQIAANIKDKLVCFTVIDNGLGISDA
DKKKIFDRFYRVDKARTRQKGGFGLGLSLAQQIIKNLDGEISVRDNQPKGTIFEVRLPK

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=166022 A7J08_RS04480 WP_105178521.1 886119..887498(+) (ciaH) [Streptococcus suis strain SRD478]
ATGCCTAAGCGATTTAAAAAATTAATGTACACGGATAAATTTTCTTTCTTTATCCGTTATTTTGCAGTATTTACTCTGAT
TTTTGGTTTAATGACAGCCATCATTTTTCAATTAATGCGTTCAACTATGTACCAAAATTCAGATAACACCTTGAAACGCA
TTAAGAAAGAACCAGCGCTGGCTGTTGGTTTTGCAATCGCAAGAACCTATGAGCCCAATTCTGTATTTATCCTTCAAGAT
AGTCCAACTGGTGAAGAAACTACGAGCTCTAGTTCAGATAGCATGTCTGTTCCTAAAAATCAAAAAAATACTAGAGCTGG
AGATCAGCTGAGATTAGGTGCCAATACTCATGTTTTACTCTATAGTAAAAGCGGAGAGATGATTAATCCAGATACTTTTA
CTGGTTTGGCTGACCTATCATTAGACAAGGAAAAATTGGGTGAAATTAAGGAAACTACGGTTGAATCAAGTTTTGGTATG
TCTGAAGATTATCGCTATATAACGATTGGGCTGGCTACAGATGAACTAGGTTATTATTCGTCCTATGATATAAAATATGC
GACAATTTTGGTGAATGTCAGCCAAATTAAATCTTCCATTGAGAGCTATGAATCGACAGTTGCTATTGTTATGGTATCAG
CTTGGTTGATTTCTATACTAGCAAGTATTTACCTATCGAATCTTAGCATGCGTCCAATCTTAATCAGTTATCAAAAACAA
AAAGACTTCGTTGAAAATGCTAGTCATGAGTTACGCACACCGTTGGCAGTTCTTCAAAATCGCCTGGAAAGTCTATTTCG
TCATCCCGAGACAACTATTTTGGAAAGTAGTGAAAGTATCGGATCTAGTTTGGAAGAAGTGCGAAATATGCGACTATTGA
CAACAAATTTACTTAATTTAGCTCGTCGTGATGATGGCTTAAAAGTCGATATGATCGATGTCCAACCCAACTATTTTGAT
GAAATCTTTGCTAATTACCTTATGATTGCCGAAGAAAATGGAAAAACTCTAACAGTTAATAATTTGATTCATCAGCCAAT
TCGAACAGACAAGGTTTTGATTAAACAGTTGCTCACCATTTTGTTTGACAACGCTATGAAGTATACCGATGATGATGGGA
CAATTCAAATAGCAGCTAATATCAAGGACAAATTAGTTTGTTTTACAGTTATTGACAATGGTTTGGGAATCAGCGATGCC
GATAAAAAGAAAATCTTTGATCGCTTTTACCGAGTTGACAAGGCTAGAACACGTCAAAAAGGTGGATTTGGTTTAGGTTT
ATCTTTAGCTCAACAAATTATTAAGAATTTAGATGGTGAGATTTCTGTGAGAGATAACCAACCGAAAGGAACTATTTTTG
AGGTACGTTTACCCAAATAA

Domains

Predicted by InterProScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(240-306)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(350-458)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaH Streptococcus pneumoniae Rx1

49.127

99.782

0.49
  ciaH Streptococcus pneumoniae D39

49.127

99.782

0.49
  ciaH Streptococcus pneumoniae R6

49.127

99.782

0.49
  ciaH Streptococcus pneumoniae TIGR4

49.127

99.782

0.49
  ciaH Streptococcus mutans UA159

49.231

99.129

0.488