Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   MTVDSCj16_RS03645 Genome accession   NZ_CP017033
Coordinates   662988..663761 (+) Length   257 a.a.
NCBI ID   WP_069360543.1    Uniprot ID   -
Organism   Campylobacter jejuni subsp. jejuni strain MTVDSCj16     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 657988..668761
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MTVDSCj16_RS03630 (MTVDSCj16_0722) - 658855..660789 (-) 1935 WP_069360541.1 ribonuclease R family protein -
  MTVDSCj16_RS03635 (MTVDSCj16_0723) ilvC 660908..661930 (+) 1023 WP_002855220.1 ketol-acid reductoisomerase -
  MTVDSCj16_RS03640 (MTVDSCj16_0724) - 661934..662998 (+) 1065 WP_069360542.1 divergent polysaccharide deacetylase family protein -
  MTVDSCj16_RS03645 (MTVDSCj16_0725) dprA 662988..663761 (+) 774 WP_069360543.1 DNA-processing protein DprA Machinery gene
  MTVDSCj16_RS03650 (MTVDSCj16_0726) dprB 663758..664141 (+) 384 WP_002854812.1 Holliday junction resolvase RuvX Machinery gene
  MTVDSCj16_RS03655 (MTVDSCj16_0727) - 664170..665009 (+) 840 WP_079263865.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  MTVDSCj16_RS03660 (MTVDSCj16_0728) msrA 665185..665682 (-) 498 WP_002898554.1 peptide-methionine (S)-S-oxide reductase MsrA -
  MTVDSCj16_RS03665 (MTVDSCj16_0729) ppa 665723..666241 (-) 519 WP_069360544.1 inorganic diphosphatase -
  MTVDSCj16_RS03670 (MTVDSCj16_0730) adk 666251..666829 (-) 579 WP_002859580.1 adenylate kinase -
  MTVDSCj16_RS03675 (MTVDSCj16_0731) aspS 666826..668577 (-) 1752 WP_069360545.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28839.75 Da        Isoelectric Point: 7.6817

>NTDB_id=165831 MTVDSCj16_RS03645 WP_069360543.1 662988..663761(+) (dprA) [Campylobacter jejuni subsp. jejuni strain MTVDSCj16]
MASEILPDEFLELFKDLKKPPKKLHYKGNLSLLKQDKIAIIGSRRMSVYTKNCVFSLASMLKNAHLCVVSGGALGVDITV
SMAAMPNTIGIFANGLDQIYPRTNEKIIKQIYENALALSEYEDDYLPKNYDFLLRNRLVIALSKAVVVAQADIKSGSMQS
AKLALELHKPLYVLPQRLGESTGTNLLLKENKAKLICDFKEFVSEFASIDMNQDEFLEFCKKGVSVDEALKIYGQKVYEY
ELEGKISIEGLFIRVLV

Nucleotide


Download         Length: 774 bp        

>NTDB_id=165831 MTVDSCj16_RS03645 WP_069360543.1 662988..663761(+) (dprA) [Campylobacter jejuni subsp. jejuni strain MTVDSCj16]
ATGGCAAGTGAAATTTTGCCTGATGAATTTTTAGAACTTTTTAAAGATTTAAAAAAGCCTCCTAAAAAATTACACTATAA
AGGAAATTTATCTTTATTAAAACAAGATAAAATCGCTATTATAGGTTCAAGGCGTATGAGTGTTTATACGAAAAATTGTG
TTTTTTCTTTAGCGAGTATGCTTAAAAATGCTCATCTTTGTGTGGTAAGTGGCGGTGCTTTGGGTGTGGATATCACCGTA
AGTATGGCGGCTATGCCAAATACTATAGGTATTTTTGCCAATGGTTTAGATCAAATTTATCCAAGAACTAATGAAAAAAT
CATTAAGCAAATTTATGAAAATGCTTTAGCTTTAAGCGAATACGAAGATGATTATTTGCCAAAAAATTATGACTTTTTAC
TAAGAAATCGTTTGGTTATTGCTTTAAGTAAGGCTGTTGTGGTTGCGCAAGCAGATATAAAAAGTGGTTCCATGCAAAGT
GCAAAACTTGCTTTAGAACTTCATAAGCCTTTATATGTTTTACCGCAAAGACTAGGAGAAAGCACAGGGACTAATTTACT
TTTAAAGGAAAATAAAGCAAAGTTAATTTGTGATTTTAAAGAATTTGTAAGTGAATTTGCAAGTATAGATATGAATCAAG
ATGAGTTTTTAGAGTTTTGTAAAAAAGGTGTGAGTGTTGATGAGGCTTTAAAAATTTATGGACAAAAAGTTTATGAATAT
GAACTTGAGGGAAAAATTTCCATAGAAGGGCTTTTTATAAGGGTTTTAGTATGA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(9-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

98.828

99.611

0.984
  dprA Helicobacter pylori 26695

48.75

93.385

0.455

Multiple sequence alignment