Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   MTVDSCj16_RS03650 Genome accession   NZ_CP017033
Coordinates   663758..664141 (+) Length   127 a.a.
NCBI ID   WP_002854812.1    Uniprot ID   -
Organism   Campylobacter jejuni subsp. jejuni strain MTVDSCj16     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 658758..669141
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MTVDSCj16_RS03630 (MTVDSCj16_0722) - 658855..660789 (-) 1935 WP_069360541.1 ribonuclease R family protein -
  MTVDSCj16_RS03635 (MTVDSCj16_0723) ilvC 660908..661930 (+) 1023 WP_002855220.1 ketol-acid reductoisomerase -
  MTVDSCj16_RS03640 (MTVDSCj16_0724) - 661934..662998 (+) 1065 WP_069360542.1 divergent polysaccharide deacetylase family protein -
  MTVDSCj16_RS03645 (MTVDSCj16_0725) dprA 662988..663761 (+) 774 WP_069360543.1 DNA-processing protein DprA Machinery gene
  MTVDSCj16_RS03650 (MTVDSCj16_0726) dprB 663758..664141 (+) 384 WP_002854812.1 Holliday junction resolvase RuvX Machinery gene
  MTVDSCj16_RS03655 (MTVDSCj16_0727) - 664170..665009 (+) 840 WP_079263865.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  MTVDSCj16_RS03660 (MTVDSCj16_0728) msrA 665185..665682 (-) 498 WP_002898554.1 peptide-methionine (S)-S-oxide reductase MsrA -
  MTVDSCj16_RS03665 (MTVDSCj16_0729) ppa 665723..666241 (-) 519 WP_069360544.1 inorganic diphosphatase -
  MTVDSCj16_RS03670 (MTVDSCj16_0730) adk 666251..666829 (-) 579 WP_002859580.1 adenylate kinase -
  MTVDSCj16_RS03675 (MTVDSCj16_0731) aspS 666826..668577 (-) 1752 WP_069360545.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14159.67 Da        Isoelectric Point: 8.4950

>NTDB_id=165832 MTVDSCj16_RS03650 WP_002854812.1 663758..664141(+) (dprB) [Campylobacter jejuni subsp. jejuni strain MTVDSCj16]
MRALALDVGLKRIGVALCIDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIPKGGSSEEEMTRRIKHFVSLLE
FDKEICFVDESGTSKEALEYGIADTRKKDGKLDSLAAFIMIKDYFAL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=165832 MTVDSCj16_RS03650 WP_002854812.1 663758..664141(+) (dprB) [Campylobacter jejuni subsp. jejuni strain MTVDSCj16]
ATGAGAGCTTTGGCTTTAGATGTAGGTTTAAAACGCATAGGTGTAGCGCTTTGCATAGATAAAAAGATCGCTTTGCCTTT
AGATGCAGTTTTAAGAAAAAATCGCAATCAAGCCGCTAATGAAATCAAAAATTTACTTAAAATACATGAAATTTCTTTAC
TCATTGTAGGCATTCCTAAGGGTGGATCAAGCGAAGAAGAAATGACAAGACGCATTAAGCATTTTGTTTCTTTGCTTGAA
TTTGATAAAGAAATTTGTTTTGTAGATGAAAGCGGAACAAGTAAAGAAGCTTTAGAATACGGCATAGCCGATACGCGCAA
AAAAGATGGTAAATTAGATTCTTTAGCTGCTTTTATCATGATAAAGGATTATTTTGCTCTCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

44.094

100

0.441