Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   MTVDSCj13_RS03315 Genome accession   NZ_CP017032
Coordinates   636492..638465 (-) Length   657 a.a.
NCBI ID   WP_069360383.1    Uniprot ID   -
Organism   Campylobacter jejuni subsp. jejuni strain MTVDSCj13     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 631492..643465
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MTVDSCj13_RS09000 (MTVDSCj13_0647) kdpB 632091..633958 (+) 1868 Protein_630 potassium-transporting ATPase subunit KdpB -
  MTVDSCj13_RS03305 (MTVDSCj13_0648) kdpC 633960..634568 (+) 609 WP_032581030.1 potassium-transporting ATPase subunit KdpC -
  MTVDSCj13_RS09180 - 634571..634843 (+) 273 WP_250488238.1 hypothetical protein -
  MTVDSCj13_RS03310 (MTVDSCj13_0649) - 634891..636390 (+) 1500 WP_250488237.1 DUF4118 domain-containing protein -
  MTVDSCj13_RS03315 (MTVDSCj13_0650) uvrB 636492..638465 (-) 1974 WP_069360383.1 excinuclease ABC subunit UvrB Machinery gene
  MTVDSCj13_RS03320 (MTVDSCj13_0651) - 638619..638849 (+) 231 WP_002852327.1 hypothetical protein -
  MTVDSCj13_RS03325 (MTVDSCj13_0652) - 638839..639081 (+) 243 WP_002854947.1 hypothetical protein -
  MTVDSCj13_RS03330 (MTVDSCj13_0653) Cj0683 639078..639515 (+) 438 WP_002852324.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  MTVDSCj13_RS03335 (MTVDSCj13_0654) priA 639497..641350 (+) 1854 WP_079354713.1 primosomal protein N' -
  MTVDSCj13_RS03340 (MTVDSCj13_0655) cipA 641360..642754 (-) 1395 WP_002860010.1 DUF2972 domain-containing protein -

Sequence

Protein


Download         Length: 657 a.a.        Molecular weight: 75935.50 Da        Isoelectric Point: 6.8371

>NTDB_id=165786 MTVDSCj13_RS03315 WP_069360383.1 636492..638465(-) (uvrB) [Campylobacter jejuni subsp. jejuni strain MTVDSCj13]
MLELTSEFKPSPDQQEAIKGIVKSIKKGNKYQTLLGVTGSGKTFTMANVIKELNIPTLIMSHNKSLCAQLYSEFKGFFSK
NHVEYFISYYDYYQPEAYIPRTDVFIEKDSSTNEDLERLRLSATASLLSYEDVVCIASVSANYGLGNPNEYIGMVLIFEL
GMQISQKELLKKLVDMGYKRNDNFFDRADFRVQGDIIDIYPAYYEDEVVRLEFFGDELDAMYHYNVLENKKGKDLKRFIL
YPTSQFSVGEARLKQAIKDIKTELNERLAYFEHENKLVEYQRLKQRVEFDLEMLTSTGMCKGVENYARHLTGLKEGDTPY
TLFDYFAIKNRKFLVIVDESHVSLPQFRGMFAGDRSRKQTLVDYGFRLPSALDNRPLMFDEFIHKDCQFLFVSATPAPLE
LELSKENIFHQIMRPTGLLDPLIELKDSDNQVEILFDEAKKVIQRNERVLVTVLTKKLAEELTRYYLELGIKVKYMHSDI
DAIERNEIIRGLRSGAFDMLIGINLLREGLDLPEVSLIAIMDADKEGFLRSTTSLIQTMGRAARNVNGKVLLFCKKITKS
MQEAMDTTNERRKLQMAYNKKYNITPTSVKRHIEESLKNEEDLGEIYRKGKKLEKMPASERAKLVKELRKQMLEAAKALE
FEKAAAIRDEINKLRDL

Nucleotide


Download         Length: 1974 bp        

>NTDB_id=165786 MTVDSCj13_RS03315 WP_069360383.1 636492..638465(-) (uvrB) [Campylobacter jejuni subsp. jejuni strain MTVDSCj13]
ATGTTAGAACTTACCAGCGAATTTAAACCCAGTCCCGATCAACAAGAAGCCATAAAAGGCATAGTAAAAAGCATAAAAAA
AGGCAACAAATATCAAACCTTACTAGGCGTTACAGGAAGTGGAAAAACCTTTACCATGGCAAATGTCATTAAAGAACTTA
ATATACCCACTCTTATCATGAGTCACAACAAAAGCCTTTGTGCACAACTTTATAGCGAATTTAAAGGCTTTTTTTCTAAA
AATCATGTGGAATATTTTATATCTTATTATGATTATTATCAACCTGAAGCCTATATTCCACGCACTGATGTTTTCATAGA
AAAAGACAGCTCCACTAATGAAGACTTAGAGCGTTTAAGACTGAGTGCTACTGCTTCTCTTTTAAGTTATGAAGATGTAG
TTTGCATAGCTAGTGTTTCAGCAAATTATGGACTTGGTAATCCAAATGAATACATAGGCATGGTTTTAATCTTTGAACTG
GGTATGCAAATTTCACAAAAAGAACTTTTAAAAAAACTTGTAGATATGGGTTATAAAAGAAATGATAATTTTTTTGATCG
TGCAGATTTTAGAGTTCAAGGAGATATTATAGATATTTATCCAGCTTATTATGAAGATGAAGTAGTAAGACTTGAATTTT
TTGGCGATGAGCTTGATGCTATGTATCATTACAATGTTTTAGAAAATAAAAAAGGTAAAGATTTAAAACGCTTTATACTC
TATCCTACAAGCCAGTTTAGCGTGGGCGAAGCAAGGCTAAAACAAGCGATAAAAGACATAAAAACAGAACTTAACGAACG
CCTTGCTTATTTTGAGCATGAAAATAAACTCGTAGAATATCAACGCCTTAAACAAAGGGTTGAATTTGATCTTGAAATGC
TTACAAGCACAGGAATGTGTAAAGGAGTTGAAAACTATGCAAGGCATCTAACAGGACTTAAAGAAGGCGATACTCCTTAT
ACGCTTTTTGATTATTTTGCGATTAAAAATAGAAAATTTCTTGTCATAGTCGATGAAAGCCATGTTTCTTTACCACAATT
TCGCGGTATGTTTGCAGGAGATAGAAGTAGAAAGCAAACTTTAGTAGATTATGGTTTTCGTCTTCCATCAGCTCTTGATA
ATCGTCCTTTAATGTTTGATGAATTTATCCATAAAGATTGTCAGTTTCTTTTTGTTTCAGCCACCCCTGCCCCGCTTGAG
CTTGAACTTAGCAAGGAAAATATCTTTCATCAAATTATGCGTCCAACAGGATTACTTGATCCTTTGATAGAACTTAAAGA
TAGCGATAATCAAGTTGAAATTTTATTTGATGAAGCTAAAAAAGTCATACAAAGGAATGAACGTGTTTTAGTGACTGTGC
TAACTAAAAAACTCGCTGAAGAACTTACAAGGTATTATTTAGAGCTTGGTATAAAAGTCAAATACATGCACTCAGACATC
GATGCTATAGAACGCAATGAAATCATAAGAGGTTTAAGAAGCGGTGCTTTTGATATGCTAATTGGCATTAACTTACTTAG
AGAAGGACTAGATCTACCTGAAGTTTCACTCATTGCCATTATGGATGCAGATAAGGAAGGATTTTTAAGAAGCACTACAA
GTTTAATCCAAACCATGGGAAGAGCAGCTAGAAATGTCAATGGTAAGGTTTTGCTTTTTTGCAAAAAAATCACAAAATCC
ATGCAAGAAGCTATGGATACCACCAATGAACGCCGCAAACTTCAAATGGCTTATAATAAAAAATACAATATCACGCCAAC
TTCAGTCAAACGCCATATTGAAGAGAGTTTGAAAAATGAAGAGGATTTAGGCGAAATTTATCGCAAAGGTAAAAAACTAG
AAAAAATGCCTGCTAGCGAAAGAGCTAAACTTGTCAAAGAGTTAAGAAAACAAATGCTTGAAGCAGCTAAAGCACTTGAG
TTTGAAAAAGCTGCTGCTATTAGAGATGAGATTAATAAATTAAGAGATTTATAA

Domains

Predicted by InterProScan.

UvrB/uvrC motif (UVR)

(623-656)

Helicase conserved C-terminal domain (Helicase_C)

(439-544)

Ultra-violet resistance protein B (UvrB)

(552-593)

Type III restriction enzyme, res subunit (ResIII)

(8-116)

UvrB interaction domain (UvrB_inter)

(158-246)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae R6

50.772

98.63

0.501
  uvrB Streptococcus pneumoniae TIGR4

50.772

98.63

0.501
  uvrB Streptococcus pneumoniae D39

50.772

98.63

0.501