Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   AOX59_RS13840 Genome accession   NZ_CP013862
Coordinates   2731857..2732333 (+) Length   158 a.a.
NCBI ID   WP_068448367.1    Uniprot ID   A0A0U4FJC3
Organism   Lentibacillus amyloliquefaciens strain LAM0015     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2726857..2737333
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOX59_RS13815 (AOX59_13795) - 2727647..2728669 (+) 1023 WP_068446424.1 hypothetical protein -
  AOX59_RS13820 (AOX59_13800) - 2728740..2729642 (+) 903 WP_082684212.1 mechanosensitive ion channel family protein -
  AOX59_RS13825 (AOX59_13805) - 2729657..2729854 (+) 198 WP_068446426.1 DUF951 domain-containing protein -
  AOX59_RS13830 (AOX59_13810) ychF 2730071..2731171 (+) 1101 WP_068446428.1 redox-regulated ATPase YchF -
  AOX59_RS13835 (AOX59_13815) rpsF 2731552..2731842 (+) 291 WP_068446430.1 30S ribosomal protein S6 -
  AOX59_RS13840 (AOX59_13820) ssbA 2731857..2732333 (+) 477 WP_068448367.1 single-stranded DNA-binding protein Machinery gene
  AOX59_RS13845 (AOX59_13825) rpsR 2732399..2732629 (+) 231 WP_068446432.1 30S ribosomal protein S18 -
  AOX59_RS13850 (AOX59_13830) - 2732670..2733287 (-) 618 WP_068448368.1 ATP-binding cassette domain-containing protein -
  AOX59_RS13855 (AOX59_13835) modB 2733305..2733982 (-) 678 WP_068446434.1 molybdate ABC transporter permease subunit -
  AOX59_RS13860 (AOX59_13840) modA 2733996..2734763 (-) 768 WP_068446436.1 molybdate ABC transporter substrate-binding protein -
  AOX59_RS13865 (AOX59_13845) - 2734775..2735272 (-) 498 WP_068448369.1 DUF1189 family protein -
  AOX59_RS13870 (AOX59_13850) - 2735570..2736517 (+) 948 WP_068446438.1 YybS family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17815.58 Da        Isoelectric Point: 4.7317

>NTDB_id=165308 AOX59_RS13840 WP_068448367.1 2731857..2732333(+) (ssbA) [Lentibacillus amyloliquefaciens strain LAM0015]
MMNRVVLVGRLTRDPDLRYTPNGVAVANFRIAIDRPFSNQQGNRDADFINCVVWRRAAENLATYMKKGSMIGVDGRIQSR
SFEGRDGNTVFVTEVVADNIQFLESKGTSQSRDQQPSGFQPNQNQNQNQNQTTQTQTNENPFKDNGEPIDISDDDLPF

Nucleotide


Download         Length: 477 bp        

>NTDB_id=165308 AOX59_RS13840 WP_068448367.1 2731857..2732333(+) (ssbA) [Lentibacillus amyloliquefaciens strain LAM0015]
CTGATGAATCGTGTCGTACTCGTTGGCAGACTAACGAGGGATCCTGATTTGCGTTATACACCAAATGGCGTAGCAGTTGC
TAACTTTAGAATTGCAATTGACCGTCCGTTTTCCAATCAGCAGGGAAATCGTGATGCTGATTTCATTAATTGCGTTGTAT
GGCGGAGAGCCGCTGAAAATCTGGCAACATACATGAAAAAAGGCAGCATGATTGGTGTCGATGGCCGGATTCAGTCACGT
TCATTTGAAGGACGAGATGGAAATACCGTCTTTGTAACTGAAGTTGTCGCAGATAATATTCAGTTCCTGGAATCGAAAGG
GACGTCACAATCGAGAGATCAGCAGCCTTCAGGATTCCAGCCAAACCAGAATCAAAATCAGAACCAGAACCAGACAACTC
AAACCCAAACGAACGAAAATCCATTCAAAGATAATGGAGAACCTATTGACATATCAGACGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0U4FJC3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.857

100

0.608
  ssb Latilactobacillus sakei subsp. sakei 23K

52.353

100

0.563
  ssbB Bacillus subtilis subsp. subtilis str. 168

52.212

71.519

0.373

Multiple sequence alignment