Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   BE842_RS06000 Genome accession   NZ_CP016870
Coordinates   1326401..1328473 (+) Length   690 a.a.
NCBI ID   WP_011215992.1    Uniprot ID   -
Organism   Legionella pneumophila subsp. pneumophila strain FFI103     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1321401..1333473
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BE842_RS05975 (BE842_05975) folB 1322250..1322588 (+) 339 WP_011215989.1 dihydroneopterin aldolase -
  BE842_RS05980 (BE842_05980) - 1322628..1323323 (-) 696 WP_011215990.1 SPOR domain-containing protein -
  BE842_RS05985 (BE842_05985) argS 1323323..1325092 (-) 1770 WP_011215991.1 arginine--tRNA ligase -
  BE842_RS05990 (BE842_05990) - 1325196..1326254 (-) 1059 WP_011214278.1 AI-2E family transporter -
  BE842_RS06000 (BE842_06000) recG 1326401..1328473 (+) 2073 WP_011215992.1 ATP-dependent DNA helicase RecG Machinery gene
  BE842_RS06005 (BE842_06005) - 1329012..1330085 (-) 1074 WP_011215993.1 hypothetical protein -
  BE842_RS06010 (BE842_06010) - 1330432..1331574 (+) 1143 WP_011215994.1 cation diffusion facilitator family transporter -
  BE842_RS06015 (BE842_06015) - 1331690..1332448 (+) 759 WP_011215995.1 ZIP family metal transporter -
  BE842_RS06020 (BE842_06020) - 1332441..1333043 (+) 603 WP_011215996.1 Maf family protein -

Sequence

Protein


Download         Length: 690 a.a.        Molecular weight: 78062.33 Da        Isoelectric Point: 8.5494

>NTDB_id=164690 BE842_RS06000 WP_011215992.1 1326401..1328473(+) (recG) [Legionella pneumophila subsp. pneumophila strain FFI103]
MLSNSCEYLTGVGPTIAAKLAKCGIFTIQDLLFHLPYKYQDRTRITPIQDLRSNEWCVIAGHVCKTEIKYGKRMMLNCYV
EDKTGVVKLRFFHFNKQQIQALNNSAMIRAFGEVRGFNNQLEMIHPEYQLINQESDFHVEETLTPIYPSTQGLTQTRLRQ
LVKIALEQSEHELHQLEWMSEKQLQENNFYDLGEAIKLLHNPPPDISLSNLEAGEHPALKRLIFDELLAQQLSMQFARQS
RSKLQAPAIFFDNAIHKRFIESLPFSLTNAQQRVFKEISVDLTQSKPMLRLLQGDVGAGKTIIAALAALQAISQGFQVAF
MAPTDLLSEQHTNSLGKWLEPIGINVLRLSGKMKTTERKNALAALQDNSCKLIVGTHALFQEQVEFARLGLVIIDEQHRF
GVEQRLLLQQKGQLNQLIPHQLLMTATPIPRTLSMSHFAHLDISVIDELPPGRMPITTAVLNQDKRELIIERLQAAISNG
KQAYWVCTLIEESEKLQCMAATDTSKKLQEQLSFARVGLVHGRMKAFEKEATMAAFKQGEIDLLVATTVIEVGVDVPNAS
LMIIENAERLGLSQLHQLRGRVGRGNNQSHCLLLYQSPLSQQGAERLKIMRSTTDGFLISEKDLELRGSGEILGTKQTGF
RQFKIANLQRDKTLFTILRPIAKQLVLEKTAIARQITQRWLGNFEQFLQS

Nucleotide


Download         Length: 2073 bp        

>NTDB_id=164690 BE842_RS06000 WP_011215992.1 1326401..1328473(+) (recG) [Legionella pneumophila subsp. pneumophila strain FFI103]
GTGCTGAGTAACTCTTGTGAATATTTAACTGGCGTCGGCCCAACCATTGCAGCAAAACTTGCTAAATGTGGAATTTTCAC
GATACAAGACTTGCTTTTCCACCTGCCTTATAAATATCAGGACAGAACCAGGATAACACCAATTCAGGATTTGCGCTCCA
ATGAATGGTGCGTTATCGCGGGGCATGTATGCAAAACTGAAATAAAATACGGCAAAAGGATGATGTTGAATTGTTATGTG
GAAGATAAAACAGGAGTAGTTAAGCTTCGTTTTTTTCATTTCAATAAGCAGCAAATTCAGGCCTTGAATAATAGCGCCAT
GATTCGAGCTTTTGGCGAAGTCCGCGGATTTAACAACCAGTTGGAGATGATTCATCCAGAATATCAATTAATTAACCAAG
AATCAGATTTCCACGTAGAAGAAACGCTTACGCCAATTTATCCATCAACTCAAGGCTTGACTCAAACCCGATTAAGGCAG
TTAGTTAAAATAGCCCTGGAACAATCTGAACACGAACTTCATCAATTGGAATGGATGAGTGAAAAACAATTACAGGAAAA
CAATTTTTATGATTTGGGCGAAGCCATTAAATTACTGCATAACCCCCCGCCAGATATCTCCCTCTCCAACCTCGAAGCCG
GCGAACATCCTGCTCTCAAGCGGTTAATATTTGATGAATTATTGGCACAACAGCTCAGTATGCAATTTGCAAGACAGTCA
CGTAGCAAGCTCCAGGCTCCCGCTATATTTTTCGATAATGCAATTCATAAACGTTTTATCGAATCATTGCCATTCAGTCT
TACAAACGCACAACAACGGGTTTTTAAAGAAATCAGCGTTGATTTAACTCAAAGCAAACCCATGCTTCGTTTGCTGCAAG
GAGATGTTGGGGCGGGTAAAACCATTATCGCGGCACTAGCCGCCCTTCAAGCCATTTCACAAGGATTTCAGGTTGCTTTT
ATGGCACCAACCGATTTATTAAGTGAACAACATACAAATAGCCTTGGTAAATGGTTAGAACCTATCGGTATTAATGTATT
AAGACTGAGCGGTAAAATGAAAACCACAGAACGAAAAAATGCGCTTGCAGCCCTGCAGGACAATAGCTGTAAGCTCATTG
TTGGAACTCATGCCTTATTTCAGGAGCAAGTCGAATTCGCTCGTTTGGGTTTGGTCATTATTGACGAACAACACCGATTC
GGAGTAGAACAACGGCTCCTTCTACAACAAAAAGGGCAATTAAACCAATTAATCCCTCATCAATTATTAATGACAGCCAC
CCCTATTCCAAGAACCCTGTCAATGTCTCATTTTGCCCATTTGGATATATCGGTCATCGATGAACTACCGCCTGGCCGTA
TGCCAATTACAACAGCAGTATTAAACCAGGATAAGCGTGAACTCATTATCGAACGTTTGCAAGCAGCAATCTCCAACGGC
AAACAAGCTTACTGGGTCTGTACCCTTATAGAAGAATCTGAAAAATTACAATGCATGGCAGCAACAGATACCTCAAAAAA
ACTACAAGAACAGCTCTCTTTCGCGCGTGTTGGTCTTGTTCATGGGAGAATGAAAGCATTTGAAAAAGAAGCTACTATGG
CAGCCTTTAAACAAGGCGAGATTGATTTATTGGTGGCAACTACTGTTATTGAAGTTGGTGTAGATGTTCCCAATGCCAGT
TTAATGATCATTGAAAATGCAGAGCGACTTGGTTTGTCGCAGTTACATCAATTACGAGGGCGCGTAGGCAGAGGTAATAA
TCAATCTCATTGTCTATTACTTTATCAATCTCCTCTATCACAACAAGGTGCTGAACGTCTCAAGATCATGCGTTCAACAA
CAGACGGTTTTCTAATCTCCGAAAAGGATCTGGAGTTAAGAGGCTCAGGAGAAATATTAGGAACCAAACAGACTGGCTTT
AGACAATTTAAAATAGCTAACTTACAACGCGATAAAACCCTCTTCACTATTTTACGTCCAATTGCAAAACAACTGGTGCT
GGAAAAAACAGCAATCGCCAGACAAATTACACAACGATGGCTGGGCAATTTTGAACAATTTTTGCAAAGTTAA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(270-431)

RecG wedge domain (RecG_wedge)

(7-164)

Helicase conserved C-terminal domain (Helicase_C)

(469-586)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(613-668)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

47.774

97.681

0.467
  recG Bacillus subtilis subsp. subtilis str. 168

38.963

97.826

0.381
  recG/mmsA Streptococcus pneumoniae R6

38.531

96.667

0.372
  recG/mmsA Streptococcus pneumoniae R36A

38.531

96.667

0.372

Multiple sequence alignment