Detailed information    

insolico Bioinformatically predicted

Overview

Name   lpp1977   Type   Machinery gene
Locus tag   AVR58_RS10210 Genome accession   NZ_CP013742
Coordinates   2246729..2247535 (-) Length   268 a.a.
NCBI ID   WP_010947712.1    Uniprot ID   Q5ZU12
Organism   Legionella pneumophila strain Philadelphia-1 isolate AE     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2241729..2252535
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVR58_RS10180 (AVR58_09940) - 2242173..2242823 (-) 651 WP_010947707.1 lysoplasmalogenase -
  AVR58_RS10185 (AVR58_09945) - 2242903..2243403 (-) 501 WP_015444348.1 hypothetical protein -
  AVR58_RS10195 (AVR58_09950) - 2243895..2244755 (+) 861 WP_015444347.1 polysaccharide deacetylase family protein -
  AVR58_RS10200 (AVR58_09955) - 2244872..2246065 (-) 1194 WP_010947710.1 murein transglycosylase A -
  AVR58_RS10205 (AVR58_09960) lpp1976 2246175..2246732 (-) 558 WP_010947711.1 hypothetical protein Machinery gene
  AVR58_RS10210 (AVR58_09965) lpp1977 2246729..2247535 (-) 807 WP_010947712.1 PilW family protein Machinery gene
  AVR58_RS10215 (AVR58_09970) lpp1978 2247474..2247788 (-) 315 WP_010947713.1 type IV pilus modification PilV family protein Machinery gene
  AVR58_RS10220 (AVR58_09975) hisC 2247948..2249057 (+) 1110 WP_015444344.1 histidinol-phosphate transaminase -
  AVR58_RS10225 (AVR58_09980) - 2249094..2249435 (+) 342 WP_010947715.1 4a-hydroxytetrahydrobiopterin dehydratase -
  AVR58_RS10230 (AVR58_09985) secF 2249608..2250525 (-) 918 WP_010947716.1 protein translocase subunit SecF -
  AVR58_RS10235 (AVR58_09990) secD 2250538..2252394 (-) 1857 WP_010947717.1 protein translocase subunit SecD -

Sequence

Protein


Download         Length: 268 a.a.        Molecular weight: 31406.50 Da        Isoelectric Point: 9.1917

>NTDB_id=164622 AVR58_RS10210 WP_010947712.1 2246729..2247535(-) (lpp1977) [Legionella pneumophila strain Philadelphia-1 isolate AE]
MLRGLKKASQLFAPMIWMLIEMGRQTGFSLSEMLISLFLASIITITLTQFYIRSKSQYLKTQEQLEINFDLLWIGDLLSD
SIRKAGFTPCVSVEKLKTFDSRHAERKIINFQIENMPQVQLRINRMSDVYTEVANFMSPTQIVIEESVISNIKHPLIISD
CRQGEVHTVSKIDKLSNGYQITLKKPMQFRYDEITYLGEWLEETWFTKQNEKGEKTLHYKLFQTEELSPFIHEFYVTRRL
IKQRSVLDFSIGSDKETLRKISVSVRNL

Nucleotide


Download         Length: 807 bp        

>NTDB_id=164622 AVR58_RS10210 WP_010947712.1 2246729..2247535(-) (lpp1977) [Legionella pneumophila strain Philadelphia-1 isolate AE]
ATGTTACGTGGTTTAAAAAAAGCCAGTCAATTATTCGCTCCTATGATCTGGATGCTCATTGAAATGGGAAGACAAACAGG
ATTTAGTTTATCTGAGATGCTAATTAGTCTTTTTCTGGCAAGTATTATAACGATAACCCTTACTCAGTTTTATATAAGAA
GCAAGTCTCAATACCTAAAAACACAAGAACAGTTAGAAATTAATTTTGATTTGCTGTGGATTGGTGATCTACTAAGCGAC
AGTATTAGAAAGGCTGGATTTACTCCATGCGTAAGTGTCGAAAAATTAAAAACTTTTGATTCTCGACATGCAGAGAGGAA
AATAATTAATTTTCAAATTGAAAATATGCCACAAGTTCAACTTCGTATTAACAGAATGAGTGATGTTTATACCGAAGTGG
CGAATTTTATGAGCCCAACACAAATAGTGATTGAAGAATCAGTAATATCAAATATAAAACACCCATTAATTATTTCTGAT
TGCCGGCAAGGAGAAGTACATACGGTTTCAAAAATAGATAAACTAAGTAATGGATATCAAATTACTTTAAAAAAACCAAT
GCAGTTTCGATACGACGAAATTACTTACTTGGGAGAGTGGCTTGAAGAAACATGGTTTACTAAACAAAATGAAAAGGGTG
AAAAGACATTACATTACAAACTGTTTCAAACAGAAGAATTAAGTCCATTCATTCATGAATTTTATGTTACCAGACGTCTT
ATTAAACAGAGGTCAGTATTGGATTTTTCAATTGGTAGCGATAAGGAAACGCTACGCAAAATTAGTGTTTCGGTACGAAA
TTTATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5ZU12

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lpp1977 Legionella pneumophila str. Paris

97.015

100

0.97
  lpp1977 Legionella pneumophila strain ERS1305867

97.015

100

0.97

Multiple sequence alignment