Detailed information NTG0164622

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: BE841_RS06620
• Genome accession: NZ_CP016868
• Coordinates: 1516382..1517407 (-)
• Length: 341 a.a.
• NCBI ID: WP_011213596.1
• Uniprot ID: -
• Organism: Legionella pneumophila subsp. pneumophila strain FFI102
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1511382..1522407

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BE841_RS06595 (BE841_06595)	-	1512648..1512968 (-)	321	WP_011215335.1	hypothetical protein	-
BE841_RS06600 (BE841_06600)	ruvA	1513019..1513618 (-)	600	WP_011213600.1	Holliday junction branch migration protein RuvA	-
BE841_RS06605 (BE841_06605)	ruvC	1513615..1514139 (-)	525	WP_011215334.1	crossover junction endodeoxyribonuclease RuvC	-
BE841_RS06610 (BE841_06610)	-	1514139..1514882 (-)	744	WP_011215333.1	YebC/PmpR family DNA-binding transcriptional regulator	-
BE841_RS06615 (BE841_06615)	hmgA	1515029..1516279 (+)	1251	WP_011215332.1	homogentisate 1,2-dioxygenase	-
BE841_RS06620 (BE841_06620)	rpoS	1516382..1517407 (-)	1026	WP_011213596.1	RNA polymerase sigma factor RpoS	Regulator
BE841_RS06625 (BE841_06625)	-	1517493..1518236 (-)	744	WP_011215331.1	peptidoglycan DD-metalloendopeptidase family protein	-
BE841_RS06630 (BE841_06630)	surE	1518255..1519013 (-)	759	WP_011215330.1	5'/3'-nucleotidase SurE	-
BE841_RS06635 (BE841_06635)	-	1519016..1519399 (-)	384	WP_011215329.1	hypothetical protein	-
BE841_RS06640 (BE841_06640)	-	1519479..1521194 (+)	1716	WP_011215328.1	NAD-dependent malic enzyme	-
BE841_RS06645 (BE841_06645)	-	1521251..1521622 (-)	372	WP_011215327.1	protease inhibitor I42 family protein	-
BE841_RS06650 (BE841_06650)	-	1521660..1521977 (-)	318	WP_011215326.1	DUF2845 domain-containing protein	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 39433.70 Da
• Isoelectric Point: 4.3732

>NTDB_id=164622 BE841_RS06620 WP_011213596.1 1516382..1517407(-) (rpoS) [Legionella pneumophila subsp. pneumophila strain FFI102]
MQDEEEPIKDKEFKEEEWSEPDDDSLLSEEDIEPDIEKMEEELDELPEFTDDEAFPSFQRGKNIAKALDATQLYLGEIGF
SPLLTAEEEIHYATLALKGDMEARKKMIESNLRLVVKIARRYLNRGLPLLDLIEEGNLGLMKSVEKFDPKRGFRFSTYAT
WWIRQTIERAIMNQTRTIRLPIHVVKELNVYLRAARQLTQKLDHEPSPEEIAEMVDKPLEDVQKLLGLNDKVASVDTPIG
FDETKSLLDTIADENSLNPAELLTNENLRQHIESLLDKLTENQQQVIARRFGLRGFEKATLEDVGKEIDLTRERVRQIQV
EALKTLRTLLERVGLTQEDLF

Nucleotide

• Length: 1026 bp

>NTDB_id=164622 BE841_RS06620 WP_011213596.1 1516382..1517407(-) (rpoS) [Legionella pneumophila subsp. pneumophila strain FFI102]
ATGCAAGATGAAGAAGAGCCAATTAAGGACAAGGAATTTAAAGAAGAGGAATGGTCTGAGCCAGATGATGACTCTCTGTT
GTCAGAAGAGGATATTGAACCTGATATCGAAAAAATGGAAGAAGAGCTTGATGAACTTCCAGAGTTTACTGATGATGAAG
CTTTTCCTTCATTCCAGCGCGGGAAAAATATTGCCAAGGCTTTAGATGCAACTCAACTTTACTTGGGTGAAATTGGTTTT
TCTCCTTTGCTAACGGCTGAAGAAGAAATCCATTATGCGACTCTTGCTTTAAAAGGTGATATGGAAGCACGCAAGAAAAT
GATTGAGTCGAATTTGCGCCTGGTGGTTAAAATAGCCAGACGTTATCTTAATAGAGGCTTACCTCTTCTGGATCTAATCG
AAGAGGGTAACCTGGGTTTAATGAAGTCTGTTGAGAAATTTGACCCCAAGCGAGGATTCCGTTTTTCAACTTATGCGACC
TGGTGGATTAGGCAAACTATTGAGCGCGCAATTATGAATCAAACGAGAACTATCCGCCTGCCTATTCATGTCGTGAAAGA
ACTTAATGTATATCTCAGAGCGGCAAGACAATTGACGCAAAAACTGGATCATGAACCATCACCGGAAGAAATAGCGGAAA
TGGTGGATAAGCCTTTGGAGGATGTCCAAAAATTATTGGGTTTGAATGATAAAGTCGCCTCGGTTGATACTCCAATTGGA
TTTGATGAAACCAAATCTTTATTAGATACAATTGCTGATGAAAACAGTTTAAATCCTGCAGAGCTGCTAACCAACGAGAA
TTTAAGGCAGCATATAGAATCTCTTCTGGATAAATTAACTGAGAATCAACAGCAGGTTATCGCAAGACGTTTTGGGTTAA
GAGGTTTTGAAAAAGCGACACTGGAAGACGTTGGTAAAGAAATTGATTTGACCCGAGAACGCGTTCGCCAAATTCAAGTT
GAAGCTTTGAAGACACTTAGAACTTTGTTAGAGCGGGTTGGACTAACACAAGAGGATTTGTTTTGA

Domains

Predicted by InterProScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (69-101)

• Sigma-70 region 3 (Sigma70_r3) (187-261)

• Sigma-70 region 2 (Sigma70_r2) (107-176)

• Sigma-70, region 4 (Sigma70_r4) (275-327)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	67.509	81.232	0.548