Detailed information
Bioinformatically predicted
Overview
| Name | lpp1978 | Type | Machinery gene |
| Locus tag | AVR58_RS10215 | Genome accession | NZ_CP013742 |
| Coordinates | 2247474..2247788 (-) | Length | 104 a.a. |
| NCBI ID | WP_010947713.1 | Uniprot ID | Q5ZU11 |
| Organism | Legionella pneumophila strain Philadelphia-1 isolate AE | ||
| Function | DNA uptake (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2242474..2252788
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AVR58_RS10185 (AVR58_09945) | - | 2242903..2243403 (-) | 501 | WP_015444348.1 | hypothetical protein | - |
| AVR58_RS10195 (AVR58_09950) | - | 2243895..2244755 (+) | 861 | WP_015444347.1 | polysaccharide deacetylase family protein | - |
| AVR58_RS10200 (AVR58_09955) | - | 2244872..2246065 (-) | 1194 | WP_010947710.1 | murein transglycosylase A | - |
| AVR58_RS10205 (AVR58_09960) | lpp1976 | 2246175..2246732 (-) | 558 | WP_010947711.1 | hypothetical protein | Machinery gene |
| AVR58_RS10210 (AVR58_09965) | lpp1977 | 2246729..2247535 (-) | 807 | WP_010947712.1 | PilW family protein | Machinery gene |
| AVR58_RS10215 (AVR58_09970) | lpp1978 | 2247474..2247788 (-) | 315 | WP_010947713.1 | type IV pilus modification PilV family protein | Machinery gene |
| AVR58_RS10220 (AVR58_09975) | hisC | 2247948..2249057 (+) | 1110 | WP_015444344.1 | histidinol-phosphate transaminase | - |
| AVR58_RS10225 (AVR58_09980) | - | 2249094..2249435 (+) | 342 | WP_010947715.1 | 4a-hydroxytetrahydrobiopterin dehydratase | - |
| AVR58_RS10230 (AVR58_09985) | secF | 2249608..2250525 (-) | 918 | WP_010947716.1 | protein translocase subunit SecF | - |
| AVR58_RS10235 (AVR58_09990) | secD | 2250538..2252394 (-) | 1857 | WP_010947717.1 | protein translocase subunit SecD | - |
| AVR58_RS10240 (AVR58_09995) | yajC | 2252416..2252751 (-) | 336 | WP_010947718.1 | preprotein translocase subunit YajC | - |
Sequence
Protein
Download Length: 104 a.a. Molecular weight: 12330.42 Da Isoelectric Point: 9.4609
>NTDB_id=164623 AVR58_RS10215 WP_010947713.1 2247474..2247788(-) (lpp1978) [Legionella pneumophila strain Philadelphia-1 isolate AE]
MSKHQGFTLMEVLVSLMLMTTVVLMLVEQQLKTRDIINHLIWRIQGSQYLDQVDEALYISENRLPLPPSNYHFDIRRSQK
KIILNVTWFKKSQSIIRSYDLDAH
MSKHQGFTLMEVLVSLMLMTTVVLMLVEQQLKTRDIINHLIWRIQGSQYLDQVDEALYISENRLPLPPSNYHFDIRRSQK
KIILNVTWFKKSQSIIRSYDLDAH
Nucleotide
Download Length: 315 bp
>NTDB_id=164623 AVR58_RS10215 WP_010947713.1 2247474..2247788(-) (lpp1978) [Legionella pneumophila strain Philadelphia-1 isolate AE]
ATGAGCAAGCATCAGGGTTTCACTCTAATGGAAGTACTTGTGTCATTAATGCTAATGACAACGGTAGTTCTGATGTTAGT
GGAACAACAGTTGAAAACCAGAGATATAATCAATCATCTTATTTGGCGAATTCAAGGTTCCCAATATCTAGATCAAGTAG
ATGAAGCATTATATATTAGTGAGAATAGACTCCCTCTGCCGCCTTCAAATTATCATTTTGATATCAGGAGATCTCAAAAG
AAAATCATTTTGAATGTTACGTGGTTTAAAAAAAGCCAGTCAATTATTCGCTCCTATGATCTGGATGCTCATTGA
ATGAGCAAGCATCAGGGTTTCACTCTAATGGAAGTACTTGTGTCATTAATGCTAATGACAACGGTAGTTCTGATGTTAGT
GGAACAACAGTTGAAAACCAGAGATATAATCAATCATCTTATTTGGCGAATTCAAGGTTCCCAATATCTAGATCAAGTAG
ATGAAGCATTATATATTAGTGAGAATAGACTCCCTCTGCCGCCTTCAAATTATCATTTTGATATCAGGAGATCTCAAAAG
AAAATCATTTTGAATGTTACGTGGTTTAAAAAAAGCCAGTCAATTATTCGCTCCTATGATCTGGATGCTCATTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| lpp1978 | Legionella pneumophila strain ERS1305867 |
96.154 |
100 |
0.962 |
| lpp1978 | Legionella pneumophila str. Paris |
94.231 |
100 |
0.942 |