Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   RD2015_RS20620 Genome accession   NZ_CP013729
Coordinates   4801790..4802170 (-) Length   126 a.a.
NCBI ID   WP_088451150.1    Uniprot ID   -
Organism   Roseateles depolymerans strain KCTC 42856     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 4796790..4807170
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RD2015_RS20605 (RD2015_4127) - 4798447..4800717 (-) 2271 WP_083525844.1 methyl-accepting chemotaxis protein -
  RD2015_RS20610 (RD2015_4128) - 4800776..4801294 (-) 519 WP_058936516.1 chemotaxis protein CheW -
  RD2015_RS20615 (RD2015_4129) - 4801299..4801664 (-) 366 WP_058936517.1 response regulator -
  RD2015_RS20620 (RD2015_4130) pilG 4801790..4802170 (-) 381 WP_088451150.1 response regulator Regulator
  RD2015_RS20625 (RD2015_4131) - 4802318..4802509 (-) 192 WP_250636786.1 rubredoxin -
  RD2015_RS20630 (RD2015_4132) thiD 4802643..4803605 (+) 963 WP_232309839.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  RD2015_RS20635 (RD2015_4133) hemL 4803617..4804915 (+) 1299 WP_058936520.1 glutamate-1-semialdehyde 2,1-aminomutase -
  RD2015_RS20640 (RD2015_4134) mpl 4805052..4806416 (+) 1365 WP_058936521.1 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 14242.40 Da        Isoelectric Point: 7.8524

>NTDB_id=164532 RD2015_RS20620 WP_088451150.1 4801790..4802170(-) (pilG) [Roseateles depolymerans strain KCTC 42856]
MESKATKVLVIDDSNTIRRSAEIFLKQGGHQVVLAEDGFDALAKLSDYQPDLVFCDILMPRLDGYQTCAIIKRNPQFSQV
PVIMLSSKDGLFDKARGRMVGSQDYLTKPFTKDQLLQAVQQHRREP

Nucleotide


Download         Length: 381 bp        

>NTDB_id=164532 RD2015_RS20620 WP_088451150.1 4801790..4802170(-) (pilG) [Roseateles depolymerans strain KCTC 42856]
TTGGAATCCAAGGCCACAAAGGTGCTGGTCATCGACGACAGCAACACCATTCGCCGCAGCGCAGAAATCTTTCTGAAGCA
GGGCGGGCATCAGGTGGTGCTGGCTGAAGATGGCTTCGACGCCCTCGCCAAGCTGAGCGATTACCAGCCGGACCTCGTGT
TCTGCGACATCCTCATGCCGCGACTGGATGGTTACCAGACTTGCGCCATCATCAAGCGCAACCCGCAGTTTTCACAAGTG
CCGGTCATCATGCTGTCGTCCAAGGATGGTCTGTTCGACAAGGCCCGCGGCCGGATGGTGGGCTCGCAGGACTATCTGAC
CAAACCGTTTACGAAAGACCAGTTGCTGCAAGCAGTCCAGCAACACCGGCGAGAGCCCTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

62.931

92.063

0.579
  pilH Synechocystis sp. PCC 6803

43.59

92.857

0.405
  vicR Streptococcus mutans UA159

39.831

93.651

0.373

Multiple sequence alignment