Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   AVM03_RS09215 Genome accession   NZ_CP013727
Coordinates   1972967..1973611 (-) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus amyloliquefaciens strain MBE1283     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1967967..1978611
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVM03_RS09180 (AVM03_09170) - 1969152..1969583 (+) 432 WP_003152066.1 Na(+)/H(+) antiporter subunit B -
  AVM03_RS09185 (AVM03_09175) - 1969583..1969924 (+) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  AVM03_RS09190 (AVM03_09180) - 1969917..1971398 (+) 1482 WP_003152061.1 Na+/H+ antiporter subunit D -
  AVM03_RS09195 (AVM03_09185) - 1971404..1971880 (+) 477 WP_003152059.1 Na+/H+ antiporter subunit E -
  AVM03_RS09200 (AVM03_09190) - 1971880..1972164 (+) 285 WP_003152057.1 Na(+)/H(+) antiporter subunit F1 -
  AVM03_RS09205 (AVM03_09195) mnhG 1972148..1972522 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  AVM03_RS09210 (AVM03_09200) - 1972562..1972945 (-) 384 WP_003152054.1 hotdog fold thioesterase -
  AVM03_RS09215 (AVM03_09205) comA 1972967..1973611 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  AVM03_RS09220 (AVM03_09210) comP 1973692..1975995 (-) 2304 WP_003152050.1 sensor histidine kinase Regulator
  AVM03_RS09230 (AVM03_09220) comQ 1976148..1977080 (-) 933 WP_025650217.1 class 1 isoprenoid biosynthesis enzyme Regulator
  AVM03_RS09235 (AVM03_09225) degQ 1977265..1977405 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  AVM03_RS09245 (AVM03_09235) - 1977871..1978212 (+) 342 WP_014305721.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=164484 AVM03_RS09215 WP_003152052.1 1972967..1973611(-) (comA) [Bacillus amyloliquefaciens strain MBE1283]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=164484 AVM03_RS09215 WP_003152052.1 1972967..1973611(-) (comA) [Bacillus amyloliquefaciens strain MBE1283]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATCGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAATAAGCTGAATGTCGGCTCCCGAACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864

Multiple sequence alignment