Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   AUZ26_RS08555 Genome accession   NZ_CP013723
Coordinates   1705351..1705833 (-) Length   160 a.a.
NCBI ID   WP_026750207.1    Uniprot ID   -
Organism   Listeria monocytogenes strain Lm 3136     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1700351..1710833
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AUZ26_RS08515 (AUZ26_08515) - 1700634..1701953 (-) 1320 WP_054314420.1 PBSX family phage terminase large subunit -
  AUZ26_RS08520 (AUZ26_08520) terS 1701892..1702677 (-) 786 WP_026750203.1 phage terminase small subunit -
  AUZ26_RS08525 (AUZ26_08525) - 1702717..1702944 (-) 228 WP_012951944.1 hypothetical protein -
  AUZ26_RS08530 (AUZ26_08530) - 1703025..1703657 (-) 633 WP_015987428.1 hypothetical protein -
  AUZ26_RS08535 (AUZ26_08535) - 1703839..1704273 (-) 435 WP_026750204.1 ArpU family phage packaging/lysis transcriptional regulator -
  AUZ26_RS15065 - 1704296..1704421 (-) 126 WP_256380165.1 hypothetical protein -
  AUZ26_RS08540 (AUZ26_08540) - 1704414..1704797 (-) 384 WP_026750205.1 DUF2481 family protein -
  AUZ26_RS08545 (AUZ26_08545) - 1704801..1705205 (-) 405 WP_026750206.1 DUF1064 domain-containing protein -
  AUZ26_RS08550 (AUZ26_08550) - 1705150..1705332 (-) 183 WP_031669838.1 hypothetical protein -
  AUZ26_RS08555 (AUZ26_08555) ssbA 1705351..1705833 (-) 483 WP_026750207.1 single-stranded DNA-binding protein Machinery gene
  AUZ26_RS08560 (AUZ26_08560) - 1705830..1706231 (-) 402 WP_026750208.1 hypothetical protein -
  AUZ26_RS08565 (AUZ26_08565) - 1706228..1706587 (-) 360 WP_026750209.1 DUF7352 domain-containing protein -
  AUZ26_RS08570 (AUZ26_08570) - 1706609..1706869 (-) 261 WP_026750210.1 DUF3850 domain-containing protein -
  AUZ26_RS08575 (AUZ26_08575) - 1706862..1707197 (-) 336 WP_026750211.1 hypothetical protein -
  AUZ26_RS08580 (AUZ26_08580) - 1707178..1707417 (-) 240 WP_200644341.1 hypothetical protein -
  AUZ26_RS08585 (AUZ26_08585) - 1707414..1707602 (-) 189 WP_026750212.1 hypothetical protein -
  AUZ26_RS08590 (AUZ26_08590) - 1707599..1708156 (-) 558 WP_026750213.1 DUF1642 domain-containing protein -
  AUZ26_RS08595 (AUZ26_08595) - 1708153..1708530 (-) 378 WP_026750214.1 hypothetical protein -
  AUZ26_RS08600 (AUZ26_08600) - 1708527..1709510 (-) 984 WP_026750215.1 DNA cytosine methyltransferase -
  AUZ26_RS08605 (AUZ26_08605) - 1709510..1709974 (-) 465 WP_026750216.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17745.53 Da        Isoelectric Point: 5.2853

>NTDB_id=164363 AUZ26_RS08555 WP_026750207.1 1705351..1705833(-) (ssbA) [Listeria monocytogenes strain Lm 3136]
MMNRVVLVGRLTKDPDLRYTPAGAAVATFTLAVNRTFTNQNGEREADFINCVVWRKPAENVANFLKKGSVAGVDGRVQTR
NYEDNDGKRVFVTEVVAESVQFLEPKNNNVEGATSNNYQNKANYSNNNQTSSYRADTSQKSDSFASEGKPIDINPDDLPF

Nucleotide


Download         Length: 483 bp        

>NTDB_id=164363 AUZ26_RS08555 WP_026750207.1 1705351..1705833(-) (ssbA) [Listeria monocytogenes strain Lm 3136]
ATGATGAATCGTGTAGTACTTGTAGGACGATTAACAAAAGATCCGGATTTACGTTACACTCCAGCAGGCGCGGCTGTTGC
GACTTTTACATTAGCAGTAAATAGAACATTCACTAATCAGAATGGAGAACGAGAAGCCGACTTTATTAATTGTGTTGTTT
GGCGTAAACCAGCGGAAAACGTTGCTAATTTCTTGAAGAAAGGAAGCGTGGCGGGCGTTGATGGACGTGTTCAAACTCGA
AATTACGAAGATAACGACGGTAAACGTGTTTTCGTTACAGAAGTAGTAGCTGAATCAGTTCAATTCTTAGAACCTAAAAA
CAACAACGTAGAAGGTGCTACATCGAATAATTACCAAAACAAGGCTAATTATTCAAATAACAATCAAACAAGCTCATATC
GAGCGGATACGAGCCAGAAGAGTGATTCATTTGCAAGTGAAGGTAAGCCGATTGATATTAATCCGGATGATTTGCCATTT
TGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.698

100

0.706
  ssb Latilactobacillus sakei subsp. sakei 23K

55.882

100

0.594
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

66.25

0.425

Multiple sequence alignment