Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   AVJ22_RS00535 Genome accession   NZ_CP013714
Coordinates   121884..122414 (+) Length   176 a.a.
NCBI ID   WP_065337213.1    Uniprot ID   -
Organism   Staphylococcus equorum strain C2014     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 116884..127414
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVJ22_RS00520 (AVJ22_00520) - 118616..120262 (+) 1647 WP_065337211.1 IS1182 family transposase -
  AVJ22_RS00525 (AVJ22_00525) - 120361..121155 (-) 795 WP_065337212.1 GH25 family lysozyme -
  AVJ22_RS00530 (AVJ22_00530) rpsF 121559..121864 (+) 306 WP_002511967.1 30S ribosomal protein S6 -
  AVJ22_RS00535 (AVJ22_00535) ssbA 121884..122414 (+) 531 WP_065337213.1 single-stranded DNA-binding protein Machinery gene
  AVJ22_RS00540 (AVJ22_00540) rpsR 122466..122708 (+) 243 WP_002506086.1 30S ribosomal protein S18 -
  AVJ22_RS00545 (AVJ22_00545) - 122787..123848 (-) 1062 WP_065337214.1 type I restriction endonuclease -
  AVJ22_RS00550 (AVJ22_00550) - 124300..124488 (+) 189 WP_065337215.1 hypothetical protein -
  AVJ22_RS00555 (AVJ22_00555) - 124762..126408 (+) 1647 WP_065337211.1 IS1182 family transposase -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 19688.22 Da        Isoelectric Point: 5.2149

>NTDB_id=164269 AVJ22_RS00535 WP_065337213.1 121884..122414(+) (ssbA) [Staphylococcus equorum strain C2014]
MINRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRKQADNVNNYLFKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVCDSVQFLEPKNQNQRHAQEGNNNFQNFGGQQSGQNTSSYQNNNQNNNNNNNNSSNKNNQSDNPF
ANANGPIDISDDDLPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=164269 AVJ22_RS00535 WP_065337213.1 121884..122414(+) (ssbA) [Staphylococcus equorum strain C2014]
ATGATAAATAGAGTTGTTTTAGTCGGTCGTTTAACGAAAGATCCAGAATATAGAACAACACCCTCAGGCGTGAGTGTTGC
GACTTTTACTCTAGCAGTAAACCGTACGTTTACAAATGCGCAAGGGGAACGCGAAGCAGATTTCATTAACTGTGTCGTTT
TTAGAAAACAAGCAGATAATGTTAATAACTACTTATTCAAAGGTAGTTTAGCTGGCGTTGACGGTCGCATTCAATCACGT
AGCTACGAAAACCAAGAAGGACGTCGTATTTTTGTAACTGAAGTGGTTTGTGATAGTGTTCAATTCCTTGAACCTAAAAA
CCAAAACCAACGTCATGCCCAAGAAGGAAATAACAATTTCCAAAACTTTGGCGGACAACAATCAGGTCAAAATACGTCAT
CGTATCAAAACAATAACCAAAACAATAATAATAATAACAACAATTCATCAAACAAAAATAATCAATCGGATAATCCATTT
GCAAATGCAAACGGACCAATTGATATTAGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

62.712

100

0.631
  ssb Latilactobacillus sakei subsp. sakei 23K

53.107

100

0.534
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.182

62.5

0.364

Multiple sequence alignment